ExecJS lets you run JavaScript code from Ruby. It automatically picks a runtime to evaluate your JavaScript program, then returns the result to you as a Ruby object.

The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.

int64 values can be created and accessed via the bit64 package and its integer64 class which package the int64 representation cleverly into a double. The nanotime package builds on this to support nanosecond-resolution timestamps. This package helps conversions between R and C++ via several helper functions provided via a single header file. A complete example client package is included as an illustration.

This package provides an archive of functions that emulate R's d-p-q-r functions for probability distributions. It is a wrapper around rmath for Julia.

The polyester package simulates RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

This package provides the functionality to set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.

This package provides an interface to the rich display capabilities of Jupyter front-ends (e.g. Jupyter Notebook). It is designed to be used from a running IRkernel session.

This package provides a Wrapper around the SVDLIBC library for (truncated) singular value decomposition of a sparse matrix. Currently, only sparse real matrices in Matrix package format are supported.

This package provides tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead.

This package provides a utility library intended at providing configurable reader macros for common tasks such as accessors, hash-tables, sets, uiop:run-program, arrays and a few others.

The goal of sansSouci is to perform post hoc inference: in a multiple testing context, sansSouci provides statistical guarantees on possibly user-defined and/or data-driven sets of hypotheses.

This package is a set of R functions for generating precise figures. This tool helps you to create clean markdown reports about what you just discovered with your analysis script.

This package provides tidy tools for quantifying how well a model fits to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE).

This package converts between R and Simple Feature sf objects, without depending on the Simple Feature library. Conversion functions are available at both the R level, and through Rcpp.

This package provides functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.

This package preloads class unions for defining/loading core OOMPA tools. It also includes vectorized operations for row-by-row means, variances, and t-tests. Finally, it provides new colorschemes.

Red Eclipse is an arena shooter, created from the Cube2 engine. Offering an innovative parkour system and distinct but all potent weapons, Red Eclipse provides fast paced and accessible gameplay.

Minima is a one-size-fits-all Jekyll theme for writers. It's Jekyll's default (and first) theme. It's what you get when you run jekyll new.

This package provides fast algorithms for the Theil-Sen estimator, Siegel's repeated median slope estimator, and Passing-Bablok regression. The implementation is based on algorithms by Dillencourt et al. (1992) <doi:10.1142/S0218195992000020> and Matousek et al. (1998) <doi:10.1007/PL00009190>. The implementations are detailed in Raymaekers (2023) <doi:10.32614/RJ-2023-012> and Raymaekers J., Dufey F. (2022) <arXiv:2202.08060>. All algorithms run in quasilinear time.

This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.

This package offers a flexible statistical simulator for scRNA-seq data. It can generate data that captures gene correlation. Additionally, it allows for varying the number of cells and sequencing depth.

This package provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e., static .html files). It currently supports linked brushing and filtering.

This package provides lots of predicates (is_* functions) to check the state of your variables, and assertions (assert_* functions) to throw errors if they aren't in the right form.

Set of tools for reading and processing spatial data. The aim is to supply the workflow to create thematic maps. This package also facilitates tmap, the package for visualizing thematic maps.