This package provides functions to run and assist four different similarity measures. The similarity measures included are: longest common subsequence (LCSS), Frechet distance, edit distance and dynamic time warping (DTW). Each of these similarity measures can be calculated from two n-dimensional trajectories, both in matrix form.

Write modelling results into a database for tigreBrowser', a web-based tool for browsing figures and summary data of independent model fits, such as Gaussian process models fitted for each gene or other genomic element. The browser is available at <https://github.com/PROBIC/tigreBrowser>.

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a common 64-bit build of U-Boot for all 64-bit capable Raspberry Pi variants.

This package only contains the file u-boot.bin.

When performing multiple imputations, while 5-10 imputations are sufficient for obtaining point estimates, a larger number of imputations are needed for proper standard error estimates. This package allows you to calculate how many imputations are needed, following the work of von Hippel (2020) <doi:10.1177/0049124117747303>.

This package provides classes and functions for metrics calculation as part of the EarthScope MUSTANG project. The functionality in this package builds upon the base classes of the IRISSeismic package. Metrics include basic statistics as well as higher level health metrics that can help identify problematic seismometers.

Rainbow-blocks is an Emacs mode that highlights blocks made of parentheses, brackets, and braces according to their depth. Each successive level is highlighted in a different color. This makes it easy to orient yourself in the code, and tell which statements are at a given level.

RSyntaxTextArea is a syntax highlighting, code folding text component for Java Swing. It extends JTextComponent so it integrates completely with the standard javax.swing.text package. It is fast and efficient, and can be used in any application that needs to edit or view source code.

Different measures which can be used to quantify similarities between regions. These measures are isonymy, isonymy between, Lasker distance, coefficients of Hedrick and Nei. In addition, it calculates biodiversity indices such as Margalef, Menhinick, Simpson, Shannon, Shannon-Wiener, Sheldon, Heip, Hill Numbers, Geometric Mean and Cressie and Read statistics.

Spatially-resolved transcriptomics (SRT) and single-nucleus RNA-sequencing (snRNA-seq) data from the locus coeruleus (LC) in postmortem human brain samples. Data were generated with the 10x Genomics Visium SRT and 10x Genomics Chromium snRNA-seq platforms. Datasets are stored in SpatialExperiment and SingleCellExperiment formats.

This unmaintained package provides a Prawn extension that allows including other Portable Document Format (PDF) documents as background or combining several PDF documents into one. This functionality used to be part of Prawn itself, but was extracted from Prawn 0.15.0 because of its many longstanding issues.

Utilize the shiny interface to parameterize a Visual Predictive Check (VPC), including selecting from different binning or binless methods and performing stratification, censoring, and prediction correction. Generate the underlying tidyvpc and ggplot2 code directly from the user interface and download R or Rmd scripts to reproduce the VPCs in R.

Given the omnipresence of the assumption of elliptical symmetry, it is essential to be able to test whether that assumption actually holds true or not for the data at hand. This package provides several statistical tests for elliptical symmetry that are described in Babic et al. (2021) <arXiv:2011.12560v2>.

The AffyRNADegradation package helps with the assessment and correction of RNA degradation effects in Affymetrix 3 expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Saikuro is a Ruby cyclomatic complexity analyzer. When given Ruby source code Saikuro will generate a report listing the cyclomatic complexity of each method found. In addition, Saikuro counts the number of lines per method and can generate a listing of the number of tokens on each line of code.

Range Modeling Metadata Standards (RMMS) address three challenges: they (i) are designed for convenience to encourage use, (ii) accommodate a wide variety of applications, and (iii) are extensible to allow the community of range modelers to steer it as needed. RMMS are based on a data dictionary that specifies a hierarchical structure to catalog different aspects of the range modeling process. The dictionary balances a constrained, minimalist vocabulary to improve standardization with flexibility for users to provide their own values. Merow et al. (2019) <DOI:10.1111/geb.12993> describe the standards in more detail. Note that users who prefer to use the R package ecospat can obtain it from <https://github.com/ecospat/ecospat>.

The Regexp::Grammars module adds a small number of new regex constructs that can be used within Perl 5.10 patterns to implement complete recursive-descent parsing. It allows you to go beyond matching complex, nested and recursive structures, and allows you to parse and extract hierarchical data from it.

This is a library to allow the easy creation of Relay-compliant servers using the GraphQL Python reference implementation of a GraphQL server. It should be noted that the code is a exact port of the original graphql-relay js implementation from Facebook.

This package provides functions for quantifying visible (VIS) and ultraviolet (UV) radiation in relation to the photoreceptors Phytochromes, Cryptochromes, and UVR8 which are present in plants. It also includes data sets on the optical properties of plants. Part of the r4photobiology suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.

mime-types-data provides a registry for information about Multipurpose Internet Mail Extensions (MIME) media type definitions. It can be used with the Ruby mime-types library or other software to determine defined filename extensions for MIME types, or to use filename extensions to look up the likely MIME type definitions.

This package provides essential Cleaning Validation functions for complying with pharmaceutical cleaning process regulatory standards. The package includes non-parametric methods to analyze drug active-ingredient residue (DAR), cleaning agent residue (CAR), and microbial colonies (Mic) for non-Poisson distributions. Additionally, Poisson methods are provided for Mic analysis when Mic data follow a Poisson distribution.

This package creates an XDG_RUNTIME_DIR directory on login per the freedesktop.org base directory spec. Flaunts the spec and never removes it, even after last logout. This keeps things simple and predictable.

The user is responsible for ensuring that the /run/user directory exists and is only writable by root.

Improve optical character recognition by binarizing images. The package focuses primarily on local adaptive thresholding algorithms. In English, this means that it has the ability to turn a color or gray scale image into a black and white image. This is particularly useful as a preprocessing step for optical character recognition or handwritten text recognition.

Creation of tables of summary statistics or counts for clinical data (for TLFs'). These tables can be exported as in-text table (with the flextable package) for a Clinical Study Report (Word format) or a topline presentation (PowerPoint format), or as interactive table (with the DT package) to an html document for clinical data review.

Scikit-rebate is a scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning. These algorithms excel at identifying features that are predictive of the outcome in supervised learning problems, and are especially good at identifying feature interactions that are normally overlooked by standard feature selection algorithms.