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Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-htmg430pmprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430pmprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type htmg430pm
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430\_PM\_probe\_tab.

r-hugene10stv1probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene10stv1probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hugene10stv1
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HuGene-1\_0-st-v1\_probe\_tab.

r-hthgu133plusb-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hthgu133plusb.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb)
Description:

Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb) assembled using data from public repositories.

r-hspec 0.99.1
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/Hspec
Licenses: LGPL 2.0+
Build system: r
Synopsis: Hspec
Description:

This package provides a package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file.

r-hsagilentdesign026652-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HsAgilentDesign026652.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652)
Description:

Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652) assembled using data from public repositories.

r-holofoodr 1.4.0
Propagated dependencies: r-treesummarizedexperiment@2.18.0 r-summarizedexperiment@1.40.0 r-stringi@1.8.7 r-s4vectors@0.48.0 r-multiassayexperiment@1.36.1 r-jsonlite@2.0.0 r-httr2@1.2.1 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/EBI-Metagenomics/HoloFoodR
Licenses: Artistic License 2.0 FSDG-compatible
Build system: r
Synopsis: R interface to EBI HoloFood resource
Description:

Utility package to facilitate integration and analysis of EBI HoloFood data in R. This package streamlines access to the resource, allowing for direct loading of data into formats optimized for downstream analytics.

r-hgfocuscdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgfocuscdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgfocuscdf
Description:

This package provides a package containing an environment representing the HG-Focus.CDF file.

r-hdxmsqc 1.6.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://github.com/ococrook/hdxmsqc
Licenses: FSDG-compatible
Build system: r
Synopsis: An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments
Description:

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

r-human370quadv3ccrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human370quadv3cCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina 370kQuad arrays using the crlmm package.

r-hgu133plus2cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133plus2cdf
Description:

This package provides a package containing an environment representing the HG-U133_Plus_2.cdf file.

r-human650v3acrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human650v3aCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina 650k arrays using the crlmm package.

r-hugene21sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene21sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster)
Description:

Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster) assembled using data from public repositories.

r-hermes 1.14.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://insightsengineering.github.io/hermes/
Licenses: ASL 2.0
Build system: r
Synopsis: Preprocessing, analyzing, and reporting of RNA-seq data
Description:

This package provides classes and functions for quality control, filtering, normalization and differential expression analysis of pre-processed `RNA-seq` data. Data can be imported from `SummarizedExperiment` as well as `matrix` objects and can be annotated from `BioMart`. Filtering for genes without too low expression or containing required annotations, as well as filtering for samples with sufficient correlation to other samples or total number of reads is supported. The standard normalization methods including cpm, rpkm and tpm can be used, and DESeq2` as well as voom differential expression analyses are available.

r-human610quadv1bcrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human610quadv1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina 610kQuad arrays using the crlmm package.

r-hgfocusprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgfocusprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hgfocus
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-Focus\_probe\_tab.

r-hgubeta7-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgubeta7.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Unknown annotation data (chip hgubeta7)
Description:

Unknown annotation data (chip hgubeta7) assembled using data from public repositories.

r-hd2013sgi 1.50.0
Propagated dependencies: r-vcd@1.4-13 r-splots@1.76.0 r-rcolorbrewer@1.1-3 r-lsd@4.1-0 r-limma@3.66.0 r-gplots@3.2.0 r-geneplotter@1.88.0 r-ebimage@4.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HD2013SGI
Licenses: Artistic License 2.0
Build system: r
Synopsis: Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping
Description:

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

r-htsfilter 1.50.0
Propagated dependencies: r-edger@4.8.0 r-deseq2@1.50.2 r-biocparallel@1.44.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HTSFilter
Licenses: Artistic License 2.0
Build system: r
Synopsis: Filter replicated high-throughput transcriptome sequencing data
Description:

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

r-hgu133acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133acdf
Description:

This package provides a package containing an environment representing the HG-U133A.cdf file.

r-hgug4845a-db 0.0.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgug4845a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: agilent AMADID 026652 annotation data (chip hgug4845a)
Description:

agilent AMADID 026652 annotation data (chip hgug4845a) assembled using data from public repositories.

r-hcatonsildata 1.8.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/massonix/HCATonsilData
Licenses: Expat
Build system: r
Synopsis: Provide programmatic access to the tonsil cell atlas datasets
Description:

This package provides access to the scRNA-seq, scATAC-seq, multiome, CITE-seq and spatial transcriptomics (Visium) data generated by the tonsil cell atlas in the context of the Human Cell Atlas (HCA). The data is provided via the Bioconductor project in the form of SingleCellExperiments. Additionally, information on the whole compendium of identified cell types is provided in form of a glossary.

r-hapmap100khind 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmap100khind
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Sample data - Hapmap 100K HIND Affymetrix
Description:

Sample dataset obtained from http://www.hapmap.org.

r-humanomni1quadv1bcrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/humanomni1quadv1bCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina Omni1 Quad arrays using the crlmm package.

r-hicaggr 1.6.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HicAggR
Licenses: Expat
Build system: r
Synopsis: Set of 3D genomic interaction analysis tools
Description:

This package provides a set of functions useful in the analysis of 3D genomic interactions. It includes the import of standard HiC data formats into R and HiC normalisation procedures. The main objective of this package is to improve the visualization and quantification of the analysis of HiC contacts through aggregation. The package allows to import 1D genomics data, such as peaks from ATACSeq, ChIPSeq, to create potential couples between features of interest under user-defined parameters such as distance between pairs of features of interest. It allows then the extraction of contact values from the HiC data for these couples and to perform Aggregated Peak Analysis (APA) for visualization, but also to compare normalized contact values between conditions. Overall the package allows to integrate 1D genomics data with 3D genomics data, providing an easy access to HiC contact values.

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Total results: 69112