_            _    _        _         _
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

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r-pandar 1.42.0
Propagated dependencies: r-runit@0.4.33.1 r-reshape@0.8.10 r-plyr@1.8.9 r-matrixstats@1.5.0 r-igraph@2.2.1 r-hexbin@1.28.5 r-ggplot2@4.0.1 r-biocgenerics@0.56.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pandaR
Licenses: GPL 2
Build system: r
Synopsis: PANDA Algorithm
Description:

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

r-pd-2006-10-31-rn34-refseq-promoter 0.99.3
Propagated dependencies: r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.2006.10.31.rn34.refseq.promoter
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter
Description:

Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter.

r-pd-bovgene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.bovgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix BovGene-1_0-st
Description:

Platform Design Info for Affymetrix BovGene-1_0-st.

r-pd-zebgene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.zebgene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix ZebGene-1_1-st
Description:

Platform Design Info for Affymetrix ZebGene-1_1-st.

r-pd-081229-hg18-promoter-medip-hx1 0.99.4
Propagated dependencies: r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.081229.hg18.promoter.medip.hx1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1
Description:

Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1.

r-pgca 1.34.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pgca
Licenses: GPL 2+
Build system: r
Synopsis: PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data
Description:

Protein Group Code Algorithm (PGCA) is a computationally inexpensive algorithm to merge protein summaries from multiple experimental quantitative proteomics data. The algorithm connects two or more groups with overlapping accession numbers. In some cases, pairwise groups are mutually exclusive but they may still be connected by another group (or set of groups) with overlapping accession numbers. Thus, groups created by PGCA from multiple experimental runs (i.e., global groups) are called "connected" groups. These identified global protein groups enable the analysis of quantitative data available for protein groups instead of unique protein identifiers.

r-pchicdata 1.38.0
Propagated dependencies: r-chicago@1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PCHiCdata
Licenses: Artistic License 2.0
Build system: r
Synopsis: Promoter Capture Hi-C data
Description:

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

r-prostatecancergrasso 1.38.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/prostateCancerGrasso
Licenses: Artistic License 2.0
Build system: r
Synopsis: Prostate Cancer Data
Description:

This package provides a Bioconductor data package for the Grasso (2012) Prostate Cancer dataset.

r-pd-atdschip-tiling 0.48.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.atdschip.tiling
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Atdschip_tiling
Description:

Platform Design Info for Affymetrix Atdschip_tiling.

r-pathlinkr 1.6.0
Propagated dependencies: r-visnetwork@2.1.4 r-vegan@2.7-2 r-tidyr@1.3.1 r-tidygraph@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-sigora@3.1.1 r-purrr@1.2.0 r-igraph@2.2.1 r-ggrepel@0.9.6 r-ggraph@2.2.2 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-ggforce@0.5.0 r-fgsea@1.36.0 r-dplyr@1.1.4 r-complexheatmap@2.26.0 r-clusterprofiler@4.18.2 r-circlize@0.4.16
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/hancockinformatics/pathlinkR
Licenses: FSDG-compatible
Build system: r
Synopsis: Analyze and interpret RNA-Seq results
Description:

pathlinkR is an R package designed to facilitate analysis of RNA-Seq results. Specifically, our aim with pathlinkR was to provide a number of tools which take a list of DE genes and perform different analyses on them, aiding with the interpretation of results. Functions are included to perform pathway enrichment, with muliplte databases supported, and tools for visualizing these results. Genes can also be used to create and plot protein-protein interaction networks, all from inside of R.

r-podcall 1.18.0
Propagated dependencies: r-shinyjs@2.1.0 r-shiny@1.11.1 r-rlist@0.4.6.2 r-readr@2.1.6 r-purrr@1.2.0 r-mclust@6.1.2 r-laplacesdemon@16.1.6 r-gridextra@2.3 r-ggplot2@4.0.1 r-dt@0.34.0 r-diptest@0.77-2
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PoDCall
Licenses: GPL 3
Build system: r
Synopsis: Positive Droplet Calling for DNA Methylation Droplet Digital PCR
Description:

Reads files exported from QX Manager or QuantaSoft containing amplitude values from a run of ddPCR (96 well plate) and robustly sets thresholds to determine positive droplets for each channel of each individual well. Concentration and normalized concentration in addition to other metrics is then calculated for each well. Results are returned as a table, optionally written to file, as well as optional plots (scatterplot and histogram) for both channels per well written to file. The package includes a shiny application which provides an interactive and user-friendly interface to the full functionality of PoDCall.

r-pd-hg-u95e 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95e
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95E
Description:

Platform Design Info for The Manufacturer's Name HG_U95E.

r-pvca 1.50.0
Propagated dependencies: r-vsn@3.78.0 r-matrix@1.7-4 r-lme4@1.1-37 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pvca
Licenses: LGPL 2.0+
Build system: r
Synopsis: Principal Variance Component Analysis (PVCA)
Description:

This package contains the function to assess the batch sourcs by fitting all "sources" as random effects including two-way interaction terms in the Mixed Model(depends on lme4 package) to selected principal components, which were obtained from the original data correlation matrix. This package accompanies the book "Batch Effects and Noise in Microarray Experiements, chapter 12.

r-plyinteractions 1.8.0
Propagated dependencies: r-tidyselect@1.2.1 r-tibble@3.3.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rlang@1.1.6 r-plyranges@1.30.1 r-iranges@2.44.0 r-interactionset@1.38.0 r-genomicranges@1.62.0 r-dplyr@1.1.4 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/js2264/plyinteractions
Licenses: Artistic License 2.0
Build system: r
Synopsis: Extending tidy verbs to genomic interactions
Description:

Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.

r-process 1.86.0
Propagated dependencies: r-icens@1.82.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PROcess
Licenses: Artistic License 2.0
Build system: r
Synopsis: Ciphergen SELDI-TOF Processing
Description:

This package provides a package for processing protein mass spectrometry data.

r-pd-pae-g1a 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.pae.g1a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Pae_G1a
Description:

Platform Design Info for The Manufacturer's Name Pae_G1a.

r-pd-nugo-hs1a520180 3.4.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.nugo.hs1a520180
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180
Description:

Platform Design Info for The Manufacturer's Name NuGO_Hs1a520180.

r-pd-x-laevis-2 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.x.laevis.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name X_laevis_2
Description:

Platform Design Info for The Manufacturer's Name X_laevis_2.

r-peakcombiner 1.0.0
Propagated dependencies: r-tidyselect@1.2.1 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-seqinfo@1.0.0 r-rlang@1.1.6 r-readr@2.1.6 r-purrr@1.2.0 r-iranges@2.44.0 r-here@1.0.2 r-genomicranges@1.62.0 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/novartis/peakCombiner/
Licenses: Expat
Build system: r
Synopsis: The R package to curate and merge enriched genomic regions into consensus peak sets
Description:

peakCombiner, a fully R based, user-friendly, transparent, and customizable tool that allows even novice R users to create a high-quality consensus peak list. The modularity of its functions allows an easy way to optimize input and output data. A broad range of accepted input data formats can be used to create a consensus peak set that can be exported to a file or used as the starting point for most downstream peak analyses.

r-pd-cyngene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cyngene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix CynGene-1_0-st
Description:

Platform Design Info for Affymetrix CynGene-1_0-st.

r-pd-mg-u74av2 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mg.u74av2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74Av2
Description:

Platform Design Info for The Manufacturer's Name MG_U74Av2.

r-promise 1.62.0
Propagated dependencies: r-gseabase@1.72.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PROMISE
Licenses: GPL 2+
Build system: r
Synopsis: PRojection Onto the Most Interesting Statistical Evidence
Description:

This package provides a general tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables as described in Pounds et. al. (2009) Bioinformatics 25: 2013-2019.

r-pd-ecoli 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ecoli
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Ecoli
Description:

Platform Design Info for The Manufacturer's Name Ecoli.

r-pd-tomato 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.tomato
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Tomato
Description:

Platform Design Info for The Manufacturer's Name Tomato.

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Total results: 68658