Full genome sequences for Cicer arietinum (Chickpea) as provided by NCBI (ASM33114v1, Jan. 2013) and stored in Biostrings objects.

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg17, May 2004) and stored in Biostrings objects.

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg18, Mar. 2006) and stored in Biostrings objects.

Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1) assembled using data from public repositories.

This package attempts to represent Go values in a form that can be used almost directly in Go source code.

The Account Cash Rounding Tryton module allows cash amounts to be rounded using the cash rounding factor of the currency.

Simulate an angler population, sample the simulated population with a user-specified survey times, and calculate metrics from a bus route-type creel survey.

Full genome sequences for Mustela putorius furo (Ferret) as provided by UCSC (musFur1, Apr. 2011) and stored in Biostrings objects.

This package provides full genome sequences for Homo sapiens as provided by UCSC (hg19, February 2009) and stored in Biostrings objects.

Develop Nonlinear Mixed Effects (NLME) models for pharmacometrics using a shiny interface. The Pharmacometric Modeling Language (PML) code updates in real time given changes to user inputs. Models can be executed using the Certara.RsNLME package. Additional support to generate the underlying Certara.RsNLME code to recreate the corresponding model in R is provided in the user interface.

This package provides full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings objects.

This package provides full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.

This package provides full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, July 2007) and stored in Biostrings objects.

This package includes details on variants for each probe on the 450k bead chip for each of the four populations (Asian, American, African and European).

ring provides a high performance and thread safe Go implementation of a bloom filter.

This package is a simple tracing application that logs messages depending on environment variables. It is very much inspired by git's GIT_TRACE mechanism.

This module provides conflicts checking for Module::Runtime, which had a recent release that broke some versions of Moose. It is called from Moose::Conflicts and moose-outdated.

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Package vaxis is a terminal user interface for modern terminals. It supports supports modern terminal features, such as styled underlines and graphics. A widgets package is provided with some useful widgets.

Package vaxis is a terminal user interface for modern terminals. It supports supports modern terminal features, such as styled underlines and graphics. A widgets package is provided with some useful widgets.

This package provides a toolbox to create a particle swarm optimisation (PSO), the package contains two classes: the Particle and the Particle Swarm, this two class is used to run the PSO with methods to easily print, plot and save the result.

This package contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

Image Segmentation using Superpixels, Affinity Propagation and Kmeans Clustering. The R code is based primarily on the article "Image Segmentation using SLIC Superpixels and Affinity Propagation Clustering, Bao Zhou, International Journal of Science and Research (IJSR), 2013" <https://www.ijsr.net/archive/v4i4/SUB152869.pdf>.

go-opt is a library to parse command line arguments based on tag annotations on struct fields. It came as a spin-off from aerc to deal with its internal commands.