The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.

This package implements the Adaptive Multiple Importance Sampling (AMIS) algorithm, as described by Retkute et al. (2021, <doi:10.1214/21-AOAS1486>), to estimate key epidemiological parameters by combining outputs from a geostatistical model of infectious diseases (such as prevalence, incidence, or relative risk) with a disease transmission model. Utilising the resulting posterior distributions, the package enables forward projections at the local level.

The calculator computes bifactor indices such as explained common variance (ECV), hierarchical Omega (OmegaH), percentage of uncontaminated correlations (PUC), item explained common variance (I-ECV), and more. This package is an R version of the Excel based Bifactor Indices Calculator (Dueber, 2017) <doi:10.13023/edp.tool.01> with added convenience features for directly utilizing output from several programs that can fit confirmatory factor analysis or item response models.

This interface was created to develop a standard procedure to analyse temporal trend in the framework of the OSPAR convention. The analysis process run through 4 successive steps : 1) manipulate your data, 2) select the parameters you want to analyse, 3) build your regulated time series, 4) perform diagnosis and analysis and 5) read the results. Statistical analysis call other package function such as Kendall tests or cusum() function.

ARM Trusted Firmware provides a reference implementation of secure world software for ARMv7-A and ARMv8-A, including a Secure Monitor executing at Exception Level 3 (EL3). It implements various ARM interface standards, such as:

1. The Power State Coordination Interface (PSCI)

2. Trusted Board Boot Requirements (TBBR, ARM DEN0006C-1)

3. SMC Calling Convention

4. System Control and Management Interface

5. Software Delegated Exception Interface (SDEI)

ARM Trusted Firmware provides a reference implementation of secure world software for ARMv7-A and ARMv8-A, including a Secure Monitor executing at Exception Level 3 (EL3). It implements various ARM interface standards, such as:

1. The Power State Coordination Interface (PSCI)

2. Trusted Board Boot Requirements (TBBR, ARM DEN0006C-1)

3. SMC Calling Convention

4. System Control and Management Interface

5. Software Delegated Exception Interface (SDEI)

ARM Trusted Firmware provides a reference implementation of secure world software for ARMv7-A and ARMv8-A, including a Secure Monitor executing at Exception Level 3 (EL3). It implements various ARM interface standards, such as:

1. The Power State Coordination Interface (PSCI)

2. Trusted Board Boot Requirements (TBBR, ARM DEN0006C-1)

3. SMC Calling Convention

4. System Control and Management Interface

5. Software Delegated Exception Interface (SDEI)

Assist novice developers when preparing a single package or a set of integrated packages to submit to CRAN. Provide additional resources to facilitate the automation of the following individual or batch processing: check local source packages; build local .tar.gz source files; install packages from local .tar.gz files; detect conflicts between function names in the environment. The additional resources include determining the identity and ordering of the packages to process when updating an imported package.

The udder quarter infection data set contains infection times of individual cow udder quarters with Corynebacterium bovis (Laevens et al. 1997 <DOI:10.3168/jds.S0022-0302(97)76295-7>). Obviously, the four udder quarters are clustered within a cow, and udder quarters are sampled only approximately monthly, generating interval-censored data. The data set contains both covariates that change within a cow (e.g., front and rear udder quarters) and covariates that change between cows (e.g., parity [the number of previous calvings]). The correlation between udder infection times within a cow also is of interest, because this is a measure of the infectivity of the agent causing the disease. Various models have been applied to address the problem of interdependence for right-censored event times. These models, as applied to this data set, can be found back in the publications found in the reference list.

Ecological alteration of degraded lands can improve their sustainability by addition of large amount of biomass to soil resulting in improved soil health. Soil biological parameters (such as carbon, nitrogen and phosphorus cycling enzyme activity) are reactive to minute variations in soils [Ghosh et al. (2021) <doi:10.1016/j.ecoleng.2021.106176> ]. Hence, biological activity index combining Urease, Alkaline Phosphatase, Dehydrogenase (DHA) & Beta-Glucosidase activity will assist in detecting early changes in restored land use systems [Patidar et al. (2023) <doi:10.3389/fsufs.2023.1230156>]. This package helps to calculate Biological Activity Index (BAI) based on vectors of Land Use System/treatment and control/reference Land Use System containing four values of Urease, Alkaline Phosphatase, DHA & Beta-Glucosidase. (DHA), urease (URE), fluorescein diacetate hydrolysis (FDA) and alkaline phosphatase (ALP) activities are measured in soil samples using triphenyl tetrazolium chloride, urea, fluorescein diacetate and p-nitro phenyl-phosphate as substrates, respectively.

This package provides a clustering approach applicable to every projection method is proposed here. The two-dimensional scatter plot of any projection method can construct a topographic map which displays unapparent data structures by using distance and density information of the data. The generalized U*-matrix renders this visualization in the form of a topographic map, which can be used to automatically define the clusters of high-dimensional data. The whole system is based on Thrun and Ultsch, "Using Projection based Clustering to Find Distance and Density based Clusters in High-Dimensional Data" <DOI:10.1007/s00357-020-09373-2>. Selecting the correct projection method will result in a visualization in which mountains surround each cluster. The number of clusters can be determined by counting valleys on the topographic map. Most projection methods are wrappers for already available methods in R. By contrast, the neighbor retrieval visualizer (NeRV) is based on C++ source code of the dredviz software package, and the Curvilinear Component Analysis (CCA) is translated from MATLAB ('SOM Toolbox 2.0) to R.

This package provides a workaround for rustbuild.

Documentation at https://melpa.org/#/org-re-reveal-citeproc

This package implements a Redis client in Golang.

This crate provides internal runtime for the stdweb crate.

Normalized gene expression data from rheumatic diseases from study published by Wollbold et al. in 2009, provided as an eSet.

curve25519-dalek Derives

Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.1) for the human genome version hs37d5.

Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.1) for the human genome version GRCh38.

This package provides curve25519-dalek Derives.

This package provides curve25519-dalek Derives.

Bencher compatibility layer for CodSpeed.