Sample dataset obtained from http://www.hapmap.org.

This package provides a package containing an environment representing the HG-U133A_tag.CDF file.

This package provides a package containing an environment representing the HG_U95C.CDF file.

Package with metadata for genotyping Illumina 650k arrays using the crlmm package.

Package with metadata for genotyping Illumina 610kQuad arrays using the crlmm package.

HGC (short for Hierarchical Graph-based Clustering) is an R package for conducting hierarchical clustering on large-scale single-cell RNA-seq (scRNA-seq) data. The key idea is to construct a dendrogram of cells on their shared nearest neighbor (SNN) graph. HGC provides functions for building graphs and for conducting hierarchical clustering on the graph. The users with old R version could visit https://github.com/XuegongLab/HGC/tree/HGC4oldRVersion to get HGC package built for R 3.6.

This package provides a healthy dataset with 20 flow cytometry samples used by the flowMatch package.

Affymetrix Affymetrix Hu35KsubA Array annotation data (chip hu35ksuba) assembled using data from public repositories.

This package provides a package containing an environment representing the HIV PRTPlus 2.CDF file.

Affymetrix time course experiment on human stem cells (two time points: undifferentiated and differentiated).

This package provides tools to perform hierarchical inference for one or multiple studies / data sets based on high-dimensional multivariate (generalised) linear models. A possible application is to perform hierarchical inference for GWA studies to find significant groups or single SNPs (if the signal is strong) in a data-driven and automated procedure. The method is based on an efficient hierarchical multiple testing correction and controls the FWER. The functions can easily be run in parallel.

This package is a parser to import HiC data into R. It accepts several type of data: tabular files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files. The HiC data can be several files, for several replicates and conditions. The data is formated in an InteractionSet object.

This package provides a package containing an environment representing the HG-Focus.CDF file.

This package provides a package containing an environment representing the HT_HG-U133B.cdf file.

This package provides a package containing an environment representing the Hu6800.CDF file.

Affymetrix hugene10 annotation data (chip hugene10stprobeset) assembled using data from public repositories.

Dataset package containing gene and isoform count matrices, and sample metadata for long-read direct cDNA sequencing of human retinal organoids, 2D retinal ganglion cell (RGC) cultures, and flowthrough fractions from H9 and EP1 iPSC cell lines. Data were generated using Oxford Nanopore Technology (ONT) direct cDNA sequencing and mapped to the GRCh38 reference genome (GENCODE v46 annotation). The package provides accessor functions returning SummarizedExperiment objects for gene-level counts, isoform-level counts, and a matrix of allele-specific expression (ASE) gene counts. Data files are stored in flat CSV format in an Open Science Framework (OSF) repository and cached locally via BiocFileCache.

Affymetrix hugene21 annotation data (chip hugene21stprobeset) assembled using data from public repositories.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HT\_MG-430B\_probe\_tab.

This package was created by frmaTools version 1.9.2.

Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories.

An implementation, which takes input data and makes it available for proper batch effect removal by ComBat or Limma. The implementation appropriately handles missing values by dissecting the input matrix into smaller matrices with sufficient data to feed the ComBat or limma algorithm. The adjusted data is returned to the user as a rebuild matrix. The implementation is meant to make as much data available as possible with minimal data loss.

Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod) assembled using data from public repositories.

Package with metadata for genotyping Illumina Omni2.5 Quad arrays using the crlmm package.