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     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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python-genomic-regions 0.0.10
Propagated dependencies: python-future@1.0.0 python-intervaltree@3.1.0 python-numpy@2.3.1 python-pandas@2.3.3 python-pybedtools@0.12.0 python-pybigwig@0.3.25 python-pytest@9.0.2 python-msgpack-numpy@0.4.8 python-cython@3.1.7 python-msgpack@1.1.2 python-pysam@0.23.3
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://pypi.org/project/genomic-regions/
Licenses: Expat
Build system: pyproject
Synopsis: Consistently handle genomic regions
Description:

This package aims to simplify working with genomic region / interval data by providing a common interface that lets you access a wide selection of file types and formats for handling genomic region data---all using the same syntax.

python-sanic-bootstrap 25.3.0
Propagated dependencies: python-aiofiles@24.1.0 python-aioquic@1.2.0 python-html5tagger@1.3.0 python-httptools@0.7.1 python-multidict@6.7.0 python-sanic-routing@23.12.0 python-tracerite@1.1.3 python-typing-extensions@4.15.0 python-ujson@5.10.0 python-uvloop@0.21.0 python-websockets@13.1
Channel: guix
Location: gnu/packages/python-web.scm (gnu packages python-web)
Home page: https://github.com/sanic-org/sanic/
Licenses: Expat
Build system: pyproject
Synopsis: Async Python web server/framework
Description:

Sanic is a Python web server and web framework that's written to go fast. It allows the usage of the async/await syntax added in Python 3.5, which makes your code non-blocking and speedy.

python-readme-renderer 44.0
Propagated dependencies: python-cmarkgfm@2024.11.20 python-docutils@0.21.2 python-nh3@0.2.20 python-pygments@2.19.2
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/pypa/readme_renderer
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Render README files in Warehouse
Description:

Readme Renderer is a library that will safely render arbitrary README files into HTML. It is designed to be used in Warehouse to render the long_description for packages. It can handle Markdown, reStructuredText, and plain text.

python-mdit-py-plugins 0.5.0
Propagated dependencies: python-markdown-it-py@4.0.0 python-attrs@25.3.0
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/executablebooks/mdit-py-plugins
Licenses: Expat
Build system: pyproject
Synopsis: Collection of plugins for markdown-it-py
Description:

This package contains a collection of plugins for markdown-it-py like:

  1. amsmath,

  2. attrs,

  3. container,

  4. definition list,

  5. dollarmath,

  6. field list,

  7. footnote,

  8. textmath, and

  9. wordcount.

python-xapian-bindings 1.4.29
Dependencies: python@3.12.12 xapian@1.4.29 zlib@1.3.1
Channel: guix
Location: gnu/packages/search.scm (gnu packages search)
Home page: https://xapian.org/
Licenses: GPL 2+
Build system: gnu
Synopsis: Python bindings for the Xapian search engine library
Description:

Xapian is a highly adaptable toolkit which allows developers to easily add advanced indexing and search facilities to their own applications. It supports the Probabilistic Information Retrieval model and also supports a rich set of boolean query operators.

python-yubikey-manager 5.8.0
Dependencies: pcsc-lite@2.4.1
Propagated dependencies: python-click@8.3.1 python-cryptography@44.0.0 python-fido2@2.1.1 python-keyring@25.7.0 python-pyopenssl@24.3.0 python-pyscard@2.3.1 python-pyusb@1.2.1
Channel: guix
Location: gnu/packages/security-token.scm (gnu packages security-token)
Home page: https://developers.yubico.com/yubikey-manager/
Licenses: FreeBSD
Build system: pyproject
Synopsis: Command line tool and library for configuring a YubiKey
Description:

Python library and command line tool for configuring a YubiKey. Note that after installing this package, you might still need to add appropriate udev rules to your system configuration to be able to configure the YubiKey as an unprivileged user.

python-zope-sqlalchemy 1.6
Propagated dependencies: python-sqlalchemy@1.4.54 python-transaction@5.0 python-zope-interface@7.2
Channel: guix
Location: gnu/packages/python-web.scm (gnu packages python-web)
Home page: https://github.com/zopefoundation/zope.sqlalchemy
Licenses: Zope Public License 2.1
Build system: pyproject
Synopsis: Minimal SQLAlchemy transaction integration for Zope
Description:

The aim of this package is to unify the plethora of existing packages integrating SQLAlchemy with Zope's transaction management. As such,it only provides a data manager and makes no attempt to define a zopeish way to configure engines.

python-freecell-solver 0.6.0
Propagated dependencies: python-cffi@1.17.1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://pypi.org/project/freecell-solver/
Licenses: Expat
Build system: pyproject
Synopsis: Freecell Solver bindings
Description:

This package provides Python bindings for the freecell-solver package. Freecell Solver is a program that automatically solves layouts of Freecell and similar variants of Card Solitaire such as Eight Off, Forecell, and Seahaven Towers, as well as Simple Simon boards.

python-casa-formats-io 0.3.0
Propagated dependencies: python-astropy@8.0.0 python-click@8.3.1 python-dask@2025.11.0 python-numpy@2.3.1
Channel: guix
Location: gnu/packages/astronomy.scm (gnu packages astronomy)
Home page: https://casa-formats-io.readthedocs.io/
Licenses: LGPL 2.0
Build system: pyproject
Synopsis: Dask-based reader for CASA data
Description:

The casa-formats-io package is a small package which implements functionality to read data stored in CASA formats (such as .image datasets). This implementation is independent of and does not use casacore.

python-scikit-optimize 0.10.2
Propagated dependencies: python-joblib@1.5.2 python-matplotlib@3.10.8 python-numpy@2.3.1 python-pyaml@25.7.0 python-scikit-learn@1.7.2 python-scipy@1.16.3
Channel: guix
Location: gnu/packages/python-science.scm (gnu packages python-science)
Home page: https://scikit-optimize.github.io/
Licenses: Modified BSD
Build system: pyproject
Synopsis: Sequential model-based optimization toolbox
Description:

Scikit-Optimize, or skopt, is a simple and efficient library to minimize (very) expensive and noisy black-box functions. It implements several methods for sequential model-based optimization. skopt aims to be accessible and easy to use in many contexts.

python-lxml-html-clean 0.4.3
Propagated dependencies: python-lxml@6.0.2
Channel: guix
Location: gnu/packages/xml.scm (gnu packages xml)
Home page: https://github.com/fedora-python/lxml_html_clean/
Licenses: Modified BSD
Build system: pyproject
Synopsis: Remove superfluous content from HTML files
Description:

This package provides a Cleaner for cleaning up HTML pages. It supports removing embedded or script content, special tags and CSS style annotations among other features. Its main purpose is removing superfluous content, it is not appropriate for security sensitive environments.

python-mkdocs-get-deps 0.2.0
Propagated dependencies: python-mergedeep@1.3.4 python-platformdirs@4.3.6 python-pyyaml@6.0.2
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/mkdocs/get-deps
Licenses: Expat
Build system: pyproject
Synopsis: MkDocs extension to list dependencies according to a mkdocs.yml
Description:

This package provides an MkDocs extension that lists all dependencies according to a mkdocs.yml file. This command guesses the Python dependencies that a MkDocs site requires in order to build. It simply prints the PyPI packages that need to be installed.

python-latexrestricted 0.6.2
Dependencies: texlive-kpathsea@2026.1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/gpoore/latexrestricted
Licenses: LPPL 1.3+
Build system: pyproject
Synopsis: Library for creating executables compatible with LaTeX's shell escape
Description:

This Python package is designed to simplify the process of creating Python executables compatible with LaTeX restricted shell escape. Restricted shell escape allows LaTeX to run trusted executables as part of compiling documents. These executables have restricted access to the file system and restricted ability to launch subprocesses.

python-anndata-minimal 0.12.7
Propagated dependencies: python-array-api-compat@1.12.0 python-h5py@3.15.1 python-legacy-api-wrap@1.5 python-natsort@8.4.0 python-numpy@2.3.1 python-packaging@25.0 python-pandas@2.3.3 python-scipy@1.16.3 python-zarr@2.18.7
Channel: guix
Location: gnu/packages/python-science.scm (gnu packages python-science)
Home page: https://github.com/theislab/anndata
Licenses: Modified BSD
Build system: pyproject
Synopsis: Annotated data for data analysis pipelines
Description:

Anndata is a package for simple (functional) high-level APIs for data analysis pipelines. In this context, it provides an efficient, scalable way of keeping track of data together with learned annotations and reduces the code overhead typically encountered when using a mostly object-oriented library such as scikit-learn.

python2-beautifulsoup4 4.9.3
Propagated dependencies: python2-soupsieve@1.9.2 python-html5lib@1.1 python2-lxml@4.6.5
Channel: guix-past
Location: past/packages/python27.scm (past packages python27)
Home page: https://www.crummy.com/software/BeautifulSoup/bs4/
Licenses: Expat
Build system: python-legacy
Synopsis: Screen-scraping library
Description:

Beautiful Soup is a Python library designed for rapidly setting up screen-scraping projects. It offers Pythonic idioms for navigating, searching, and modifying a parse tree, providing a toolkit for dissecting a document and extracting what you need. It automatically converts incoming documents to Unicode and outgoing documents to UTF-8.

python-annotated-types 0.7.0
Propagated dependencies: python-typing-extensions@4.15.0
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/annotated-types/annotated-types
Licenses: Expat
Build system: pyproject
Synopsis: Reusable constraint types to use with typing.Annotated
Description:

This package provides metadata objects which can be used to represent common constraints such as upper and lower bounds on scalar values and collection sizes, a Predicate marker for runtime checks, and descriptions of how we intend these metadata to be interpreted. In some cases, we also note alternative representations which do not require this package.

python-rpy2-rinterface 3.6.6
Dependencies: icu4c@73.1 libdeflate@1.19 r-survival@3.8-6 zlib@1.3.1
Propagated dependencies: python-cffi@1.17.1 r-minimal@4.6.0
Channel: guix
Location: gnu/packages/statistics.scm (gnu packages statistics)
Home page: https://rpy2.github.io
Licenses: MPL 2.0 GPL 2+ LGPL 2.1+
Build system: pyproject
Synopsis: Low-level interface from Python to the R
Description:

The rpy2 package is a namespace package. This is the part of that package that covers the "low-level" interface to R used in rpy2. This provides mappings to access R's C-API and utilities to do so safely. It is otherwise relatively easily to crash (segfault) a process by calling R's C-API.

python-dj-database-url 3.0.1
Propagated dependencies: python-django@5.2.15
Channel: guix
Location: gnu/packages/django.scm (gnu packages django)
Home page: https://github.com/jazzband/dj-database-url
Licenses: Modified BSD
Build system: pyproject
Synopsis: Use Database URLs in your Django Application
Description:

This simple Django utility allows you to utilize the 12factor inspired DATABASE_URL environment variable to configure your Django application.

The dj_database_url.config method returns a Django database connection dictionary, populated with all the data specified in your URL. There is also a conn_max_age argument to easily enable Django’s connection pool.

python-socksipy-branch 1.01
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://code.google.com/archive/p/socksipy-branch/
Licenses: Modified BSD
Build system: pyproject
Synopsis: Python SOCKS module
Description:

SocksiPy - A Python SOCKS client module. It provides a socket-like interface that supports connections to any TCP service through the use of a SOCKS4, SOCKS5 or HTTP proxy. The original version was developed by Dan Haim, this is a branch created by Mario Vilas to address some open issues,as the original project seems to have been abandoned circa 2007.

python-regularized-glm 1.0.2
Propagated dependencies: python-numpy@2.3.1 python-scipy@1.16.3 python-statsmodels@0.14.5
Channel: guix-science
Location: guix-science/packages/electrophysiology.scm (guix-science packages electrophysiology)
Home page: https://github.com/Eden-Kramer-Lab/regularized_glm
Licenses: Expat
Build system: pyproject
Synopsis: L2-penalized generalized linear models
Description:

A simple python package for fitting L2- and smoothing-penalized generalized linear models. Built primarily because the statsmodels GLM fit_regularized method is built to do elastic net (combination of L1 and L2 penalities), but if you just want to do an L2 or a smoothing penalty (like in generalized additive models), using a penalized iteratively reweighted least squares (p-IRLS) is much faster.

python-pytest-examples 0.0.13
Propagated dependencies: python-black@26.3.1 python-pytest@9.0.2
Channel: guix
Location: gnu/packages/check.scm (gnu packages check)
Home page: https://pypi.org/project/pytest-examples/
Licenses: Expat
Build system: pyproject
Synopsis: Pytest plugin for testing examples in docstrings and markdown files
Description:

Pytest-examples provides functionality for testing Python code examples in docstrings and markdown files, with its main features being:

  • lint code examples using ruff and black

  • run code examples

  • run code examples and check print statements are inlined correctly in the code

  • It can also update code examples in place to format them and insert or update print statements

python-shamir-mnemonic 0.3.0
Propagated dependencies: python-click@8.3.1
Channel: guix
Location: gnu/packages/python-crypto.scm (gnu packages python-crypto)
Home page: https://github.com/trezor/python-shamir-mnemonic
Licenses: Expat
Build system: pyproject
Synopsis: SLIP-39 Shamir Mnemonics
Description:

This package provides a reference implementation of SLIP-0039: Shamir's Secret-Sharing for Mnemonic Codes. This SLIP describes a standard and interoperable implementation of Shamir's secret sharing (SSS). SSS splits a secret into unique parts which can be distributed among participants, and requires a specified minimum number of parts to be supplied in order to reconstruct the original secret. Knowledge of fewer than the required number of parts does not leak information about the secret.

python-scikit-surprise 1.1.4
Propagated dependencies: python-joblib@1.5.2 python-numpy@1.26.4 python-scikit-learn@1.7.2
Channel: guix
Location: gnu/packages/python-science.scm (gnu packages python-science)
Home page: https://surpriselib.com/
Licenses: Modified BSD
Build system: pyproject
Synopsis: Recommender system library for Scikit-learn
Description:

This package provides a Python library for building and analyzing recommender systems that deal with explicit rating data. It was designed with the following purposes in mind:

  • Provide tools to handle downloaded or user-provided datasets.

  • Provide ready-to-use prediction algorithms and similarity measures.

  • Provide a base for creating custom algorithms.

  • Provide tools to evaluate, analyse and compare algorithm performance.

  • Provide documentation with precise details regarding library algorithms.

python-minimal-wrapper 3.12.12
Dependencies: bash@5.2.37
Propagated dependencies: python-minimal@3.12.12
Channel: guix
Location: gnu/packages/python.scm (gnu packages python)
Home page: https://www.python.org
Licenses: Python Software Foundation License
Build system: trivial
Synopsis: Wrapper for the Python 3 commands
Description:

This package provides wrappers for the commands of Python 3.x such that they can also be invoked under their usual names---e.g., python instead of python3 or pip instead of pip3.

To function properly, this package should not be installed together with the python package: this package uses the python package as a propagated input, so installing this package already makes both the versioned and the unversioned commands available.

Total packages: 4458