This package provides mass-spectrometry based spatial proteomics data sets and protein complex separation data. It also contains the time course expression experiment from Mulvey et al. (2015).

The enrichplot package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analyses. All the visualization methods are developed based on ggplot2 graphics.

This package contains the Battenberg R package for subclonal copy number estimation, as described by Nik-Zainal et al.

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a 32-bit build of U-Boot.

This package provides a compilation of extra ggplot2 themes, scales and utilities, including a spell check function for plot label fields and an overall emphasis on typography.

This package defines the generic method extract and provides openMP support as needed in several packages like aws, adimpro, fmri, and dwi.

This package provides a unified interface to interact with Docker and Singularity containers. You can execute a command inside a container, mount a volume or copy a file.

This library provides functionality for retrieving email via POP3, the Post Office Protocol version 3, as specified by RFC1939.

MessagePack is a binary-based efficient object serialization library. It enables to exchange structured objects between many languages like JSON. Unlike JSON, it is very fast and small.

This package provides a small subset of Unicode symbols, that are useful when building command line applications. They fall back to alternatives on terminals that do not support Unicode.

This package provides a collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.

The ammeter gem makes it easy to write specs for Rails generators. An existing user is rspec-rails, which uses ammeter to spec its own generators.

Promise is a Ruby implementation of the Promises/A+ specification. It provides 100% mutation coverage, tested on MRI 1.9, 2.0, 2.1, 2.2, Rubinius, and JRuby.

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

MessagePack is a binary-based efficient object serialization library. It enables to exchange structured objects between many languages like JSON. But unlike JSON, it is very fast and small.

This is a tool for human B-cell context-specific transcriptional regulatory network. In addition, this package provides a human normal B-cells dataset for the examples in package viper.

This package implements methods to project single-cell RNA-seq data onto a reference atlas, enabling interpretation of unknown cell transcriptomic states in the the context of known, reference states.

This package provides a collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in spdep.

This library provides methods to encode and decode Ascii85 binary-to-text encoding. The main modern use of Ascii85 is in PostScript and Portable Document Format (PDF) file formats.

Markaby allows writing HTML packages in pure Ruby. This is similar to the functionality provided by ERB, but without the mixture of HTML and additional ERB syntax.

pay-respects provides a shell helper to suggest correction for mistyped commands, with guix locate integration and an alias (default to f) to correct the previous command.

Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.

This package provides tools to visualize oligonucleotide patterns and sequence motif occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.

This package provides tools for creating, viewing, and assessing qualitative palettes with many (20-30 or more) colors. See Coombes and colleagues (2019) https://doi:10.18637/jss.v090.c01.