This package provides a backend for the selecting functions of the tidyverse. It makes it easy to implement select-like functions in your own packages in a way that is consistent with other tidyverse interfaces for selection.

This package provides tools for LiP peptide and protein significance analysis. Provides functions for summarization, estimation of LiP peptide abundance, and detection of changes across conditions. Utilizes functionality across the MSstats family of packages.

"rhinotypeR" is designed to automate the comparison of sequence data against prototype strains, streamlining the genotype assignment process. By implementing predefined pairwise distance thresholds, this package makes genotype assignment accessible to researchers and public health professionals. This tool enhances our epidemiological toolkit by enabling more efficient surveillance and analysis of rhinoviruses (RVs) and other viral pathogens with complex genomic landscapes. Additionally, "rhinotypeR" supports comprehensive visualization and analysis of single nucleotide polymorphisms (SNPs) and amino acid substitutions, facilitating in-depth genetic and evolutionary studies.

This package provides rpcsvc protocol.x files and headers that are not included with the libtirpc package. Additionally it contains rpcgen, which is used to produce header files and sources from the protocol files.

By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Assertthat is an extension to stopifnot() that makes it easy to declare the pre and post conditions that your code should satisfy, while also producing friendly error messages so that your users know what they've done wrong.

This package provides a streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.

This package implements two functions. One of them reads an Affymetrix CDF and creates a hash table environment containing the location/probe set membership mapping. The other one creates a package that automatically loads that environment.

dvd+rw-tools, mostly known for its command growisofs, is a collection of DVD and Blu-ray Disc burning tools. It requires another program, such as mkisofs, genisoimage, or xorrisofs to create ISO 9660 images.

hiredis-rb is a Ruby extension that wraps hiredis, a minimalist C client for Redis. Both the synchronous connection API and a separate protocol reader are supported. It is primarily intended to speed up parsing multi bulk replies.

Samovar is a modern framework for building command-line tools and applications. It provides a declarative class-based DSL for building command-line parsers that include automatic documentation generation. It helps you keep your functionality clean and isolated where possible.

Systemu can be used on any platform to return status, stdout, and stderr of any command. Unlike other methods like open3 and popen4 there is no danger of full pipes or threading issues hanging your process or subprocess.

scClassify is a multiscale classification framework for single-cell RNA-seq data based on ensemble learning and cell type hierarchies, enabling sample size estimation required for accurate cell type classification and joint classification of cells using multiple references.

Cutter is a free and open-source reverse engineering platform powered by rizin. It aims at being an advanced and customizable reverse engineering platform while keeping the user experience in mind. Cutter is created by reverse engineers for reverse engineers.

This package provides tools for importing and working with bibliographic references. It greatly enhances the bibentry class by providing a class BibEntry which stores BibTeX and BibLaTeX references, supports UTF-8 encoding, and can be easily searched by any field, by date ranges, and by various formats for name lists (author by last names, translator by full names, etc.). Entries can be updated, combined, sorted, printed in a number of styles, and exported. BibTeX and BibLaTeX .bib files can be read into R and converted to BibEntry objects.

It has been shown that both DNA methylation and RNA transcription are linked to chronological age and age related diseases. Several estimators have been developed to predict human aging from DNA level and RNA level. Most of the human transcriptional age predictor are based on microarray data and limited to only a few tissues. To date, transcriptional studies on aging using RNASeq data from different human tissues is limited. The aim of this package is to provide a tool for across-tissue and tissue-specific transcriptional age calculation based on GTEx RNASeq data.

This package provides classes and methods to locate, setup, subset, navigate and iterate file sets, i.e. sets of files located in one or more directories on the file system. The API is designed such that these classes can be extended via inheritance to provide a richer API for special file formats. Moreover, a specific name format is defined such that filenames and directories can be considered to have full names which consists of a name followed by comma-separated tags. This adds additional flexibility to identify file sets and individual files.

Shepherd-run is a script which assists in creating one-off shepherd services from the command line. It is meant to partially fill the void left by systemd-run, since GNU Guix uses GNU Shepherd as its system service manager.

This package provides tools to infer the code style (which style rules are followed and which ones are not) from one package and use it to check another. This makes it easier to find and correct the most important problems first.

Geometry shapes in R are typically represented by matrices (points, lines), with more complex shapes being lists of matrices (polygons). Geometries will convert various R objects into these shapes. Conversion functions are available at both the R level, and through Rcpp.

This package provides a wrapper around the C++ library polylabel from Mapbox, providing an efficient routine for finding the approximate pole of inaccessibility of a polygon, which usually serves as an excellent candidate for labeling of a polygon.

mlr3tuning implements methods for hyperparameter tuning, e.g. Grid Search, Random Search, or Simulated Annealing. Various termination criteria can be set and combined. The class AutoTuner provides a convenient way to perform nested resampling in combination with mlr3.

With the DiagrammeR package you can create, modify, analyze, and visualize network graph diagrams. The output can be incorporated into R Markdown documents, integrated with Shiny web apps, converted to other graph formats, or exported as image files.