Various supervised and unsupervised binning tools including using entropy, recursive partition methods and clustering.

To re-calculate the coefficients and the standard deviation when changing the reference group.

This package provides a parallel backend for the %dopar% function using the Rmpi package.

Runs an evolutionary algorithm using the AlphaSimR machinery <doi:10.1093/g3journal/jkaa017> .

Modular implementation of the Differential Evolution algorithm for experimenting with different types of operators.

Likelihood ratio tests for genome-wide association and genome-wide linkage analysis under heterogeneity.

Generate Manhattan, Q-Q, and PCA plots from GWAS and PCA results using ggplot2'.

Estimate the relative abundance of tissue-infiltrating immune subpopulations abundances using gene expression data.

Fit and plot macroecological patterns predicted by the Maximum Entropy Theory of Ecology (METE).

Compute standard Non-Compartmental Analysis (NCA) parameters for typical pharmacokinetic analyses and summarize them.

An alternative data structure and visual rendering for the profiling information generated by Rprof.

Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data.

This package provides functions for converting between UK and US spellings of English words.

Nonparametric estimation of a unimodal or U-shape covariate effect under additive hazards model.

This package provides flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures.

Constructs confidence intervals on the probability of success in a binomial experiment via several parameterizations

This package provides simple utility functions to read from and write to the system clipboards.

Assertive Expressive (AE) is an assertions library specifically designed for reuse by other test frameworks.

Assertive Expressive (AE) is an assertions library specifically designed for reuse by other test frameworks.

An interface to the Integrated Taxonomic Information System ('ITIS') (<https://www.itis.gov>). Includes functions to work with the ITIS REST API methods (<https://www.itis.gov/ws_description.html>), as well as the Solr web service (<https://www.itis.gov/solr_documentation.html>).

This package performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.

Copula-based imputation methods: parametric and nonparametric algorithms for missing multivariate data through conditional copulas.

Allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.

This package provides a ggplot2 extension for implementing parliament charts and several other useful visualizations.