This package provides a boot manager that is an EFI program.

This package provides some functions for sample classification in microarrays.

This package performs tests for paired high-throughput data.

R-hub uses GitHub Actions to run R CMD check and similar package checks. The rhub package helps you set up R-hub for your R package, and start running checks.

This package provides functions that implement the known population median test.

This package provides procedures to work with classification and regression trees.

Pviz adapts the Gviz package for protein sequences and data.

This package performs 2D Delaunay triangulation, constrained or unconstrained, with the help of the C++ library CDT. A function to plot the triangulation is provided. The constrained Delaunay triangulation has applications in geographic information systems.

This package provides a pure R implementation of the t-SNE algorithm.

This package provides functions for extracting feature contributions from a random forest model from package randomForest. Feature contributions provide detailed information about the relationship between data variables and the predicted value returned by random forest model.

This package provides a recursively partitioned mixture model for Beta and Gaussian mixtures. This is a model-based clustering algorithm that returns a hierarchy of classes, similar to hierarchical clustering, but also similar to finite mixture models.

This package provides graphical user interfaces to organize and visualize Nanopore sequencing data.

This package provides tools for the estimation and simulation of latent variable models.

This package provides unit root and cointegration tests encountered in applied econometric analysis.

This package finds the k nearest neighbours for every point in a given dataset in O(N log N) time using Arya and Mount's ANN library. Provides approximate, exact searches, fixed radius searches, bd and kb trees.

This is a package for parallel computing with a network of local and remote workers. It enables fast exchange of results between the workers through a Redis database. Key features include task queues, local caching, and sophisticated error handling.

This package provides methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintenance for package developers.

This package provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

This package provides methods and models for handling zero-inflated single cell assay data.

This tool detects batch effects in high-dimensional data based on chi^2-test.

This package provides building blocks for the design and analysis of multiobjective optimization algorithms.

This package provides tools to create Class Cover Catch Digraphs, neighborhood graphs, and relatives.

This package provides convenience functions for analyzing factorial experiments using ANOVA or mixed models.

This package provides miscellaneous functions commonly used in other packages maintained by Yihui Xie.