LIANA provides a number of methods and resource for ligand-receptor interaction inference from scRNA-seq data.

This package allows you to create Q-Q and Manhattan plots for GWAS data from PLINK results.

This package provides a cross-platform solution to open files, directories or URLs with their associated programs.

BASIX provides some efficient C/C++ implementations of native R procedures to speed up calculations in R.

This package provides a simple interface for creating active bindings where the bound function accepts additional arguments.

Pg is the Ruby interface to the PostgreSQL RDBMS. It works with PostgreSQL 9.3 and later.

This package provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.

If you are using R Markdown documents then you have sometimes restrictions about the size of the documents, e.g. number of words, number of characters or non-whitespace characters. rmdcount() computes these counts with and without code chunks and returns the result as data frame.

R interface to the CSDP semidefinite programming library. Installs version 6.1.1 of CSDP from the COIN-OR website if required. An existing installation of CSDP may be used by passing the proper configure arguments to the installation command. See the INSTALL file for further details.

This package contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.

This package provides a toolkit for working with Biological Observation Matrix (BIOM) files. Features include reading/writing all BIOM formats, rarefaction, alpha diversity, beta diversity (including UniFrac), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided.

Game of Trees (Got) is a version control system which prioritizes ease of use and simplicity over flexibility.

Read objects from the AIDA (<http://aida.freehep.org/>) file and make them available as dataframes in R.

This package provides functions to handle and aggregate population estimates for Brazilian municipalities by sex and age groups.

Small package to clean the R console and the R environment with the call of just one function.

Fits Cox regression based on retrospectively ascertained times-to-event. The method uses Inverse-Probability-Weighting estimating equations.

Implementation of the Wilkinson and Ivany (2002) approach to paleoclimate analysis, applied to isotope data extracted from clams.

Parse, format, and validate international phone numbers using Google's libphonenumber java library, <https://github.com/google/libphonenumber>.

This is the companion package to the Data Visualization Geometries Encyclopedia, providing seamless access to the associated data.

This package provides a toolkit for parsing dice notation, analyzing rolls, calculating success probabilities, and plotting outcome distributions.

Efficient covariate-adjusted estimators of quantities that are useful for establishing the effects of treatments on ordinal outcomes.

This package provides a collection of nice plotting functions directly from a data.frame with limited customisation possibilities.

Estimate a FAVAR model by a Bayesian method, based on Bernanke et al. (2005) <DOI:10.1162/0033553053327452>.

The aim of this package is to offer more variability of graphics based on the self-organizing maps.