This package provides a weighted selection probability to locate rare variants associated with multiple phenotypes.

Serves for rendering MS Word documents with R inline code and inserting tables and plots.

Helpers for transforming XML content into number of tables while preserving parent to child relationships.

Bindings for additional models for use with the parsnip package. Models include prediction rule ensembles (Friedman and Popescu, 2008) <doi:10.1214/07-AOAS148>, C5.0 rules (Quinlan, 1992 ISBN: 1558602380), and Cubist (Kuhn and Johnson, 2013) <doi:10.1007/978-1-4614-6849-3>.

Create and manipulate hypergraph objects. This early version of rhype allows for the output of matrices associated with the hypergraphs themselves. It also uses these matrices to calculate hypergraph spectra and perform spectral comparison. Functionality coming soon includes calculation of hyperpaths and hypergraph centrality measures.

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

Authors working with LaTeX articles use the built-in bibliography options and BibTeX files. While this might work with LaTeX', it does not function well with Web articles. As a way out, rebib offers tools to convert and combine bibliographies from both sources.

This package provides functions for risk management and portfolio investment of securities with practical tools for data processing and plotting. Moreover, it contains functions which perform the COS Method, an option pricing method based on the Fourier-cosine series (Fang, F. (2008) <doi:10.1137/080718061>).

This package implements robust median-based Bayesian growth curve models that handle Missing Completely at Random (MCAR), Missing At Random (MAR), and Missing Not At Random (MNAR) missing-data mechanisms, and allow auxiliary variables. Models are fitted via rjags (interface to JAGS') and summarized with coda'.

This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS.

LIANA provides a number of methods and resource for ligand-receptor interaction inference from scRNA-seq data.

BASIX provides some efficient C/C++ implementations of native R procedures to speed up calculations in R.

This package allows you to create Q-Q and Manhattan plots for GWAS data from PLINK results.

This package provides a cross-platform solution to open files, directories or URLs with their associated programs.

This package provides a simple interface for creating active bindings where the bound function accepts additional arguments.

This package provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.

Pcb-rnd is a Printed Circuit Board layout editor, part of the RiNgDove EDA suite.

Pg is the Ruby interface to the PostgreSQL RDBMS. It works with PostgreSQL 9.3 and later.

Included here are babel routines for identifying unusual ribosome protected fragment counts given mRNA counts.

Regression for a discrete response, where the conditional distribution is modelled via a discrete Weibull distribution.

Simulation of Electric Vehicles charging sessions using Gaussian models, together with time-series power demand calculations.

This package provides tools to quickly compile taxonomic and distribution data from the Brazilian Flora 2020.

Sequential change-point tests, parameters estimation, and goodness-of-fit tests for generalized Ornstein-Uhlenbeck processes.

Datasets analysed in the book Antony Unwin (2024, ISBN:978-0367674007) "Getting (more out of) Graphics".