An R-package for calculating sample size of a survival trial with or without cure fractions.

This package provides tools for phoneticians and phonologists, including functions for normalization and plotting of vowels.

Data Sets for Kumar and Petersen (2012). Statistical Methods in Customer Relationship Management, Wiley: New York.

Fit a spatial-temporal occupancy models using a probit formulation instead of a traditional logit model.

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

This package provides functions for constructing mathematical models of dynamical systems from measured input-output data.

Estimation of transition probabilities for the illness-death model and or the three-state progressive model.

This package provides R Markdown output formats to use Tufte styles for PDF and HTML output.

Perform the calculation of W-test, diagnostic checking, calculate minor allele frequency (MAF) and odds ratio.

This package provides a toolkit for working with Biological Observation Matrix (BIOM) files. Features include reading/writing all BIOM formats, rarefaction, alpha diversity, beta diversity (including UniFrac), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided.

R interface to the CSDP semidefinite programming library. Installs version 6.1.1 of CSDP from the COIN-OR website if required. An existing installation of CSDP may be used by passing the proper configure arguments to the installation command. See the INSTALL file for further details.

This package contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.

This package provides tools for differential expression analysis at both gene and isoform level using RNA-seq data

This package implements the method csSAM that computes cell-specific differential expression from measured cell proportions using SAM.

This package provides various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.

Restbed is a comprehensive and consistent programming model for building applications that require seamless and secure communication over HTTP.

This package provides a terminal emulator with hyperlink support. It's based on VTE and aimed at power users.

This package provides additional expression data on diffuse large B-cell lymphomas for the BioNet package.

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

The R package used in the manuscript "Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering".

This package provides algorithms for creating artworks in the ggplot2 language that incorporate some form of randomness.

Simulation and estimation tools for various types of ambit processes, including trawl processes and weighted trawl processes.

This is the course package for the exercise portion of the "Ecological Data Collection and Processing" course.

An efficient algorithm to generate group assignments for classroom settings while minimizing repeated pairings across multiple rounds.