This package provides functions to find all matches or non-matches, orphans, and duplicate or other replicated elements.

Use various regression models for the analysis of win loss endpoints adjusting for non-binary and multivariate covariates.

Miscellaneous functions used for x-engineering (feature engineering) or for supporting in other packages maintained by Shichen Xie'.

This package performs species distribution modeling for rare species with unprecedented accuracy (Mondanaro et al., 2023 <doi:10.1111/2041-210X.14066>) and finds the area of origin of species and past contact between them taking climatic variability in full consideration (Mondanaro et al., 2025 <doi:10.1111/2041-210X.14478>).

This package creates and maintains a build process for complex analytic tasks in R. Package allows to easily generate Makefile for the (GNU) make tool, which drives the build process by (in parallel) executing build commands in order to update results accordingly to given dependencies on changed data or updated source files.

This package performs RNA emulation and active learning proposed by Heo and Sung (2025) <doi:10.1080/00401706.2024.2376173> for multi-fidelity computer experiments. The RNA emulator is particularly useful when the simulations with different fidelity level are nonlinearly correlated. The hyperparameters in the model are estimated by maximum likelihood estimation.

Implementing the BDAT tree taper Fortran routines, which were developed for the German National Forest Inventory (NFI), to calculate diameters, volume, assortments, double bark thickness and biomass for different tree species based on tree characteristics and sorting information. See Kublin (2003) <doi:10.1046/j.1439-0337.2003.00183.x> for details.

In order to make sure that web request ends up in the correct handler function a router is often used. routr is a package implementing a simple but powerful routing functionality for R based servers. It is a fully functional fiery plugin, but can also be used with other httpuv based servers.

This is a package for noise-robust soft clustering of gene expression time-series data (including a graphical user interface).

This package provides counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences.

Proto is an object oriented system using object-based, also called prototype-based, rather than class-based object oriented ideas.

This is a companion package for the book "A Course in Statistics with R" (ISBN 978-1-119-15272-9.)

This package does local optimization using two derivatives and trust regions. Guaranteed to converge to local minimum of objective function.

This package allows users to create CSS grid and flexbox layouts for R/Shiny without needing to write custom CSS.

Ronn-NG is an updated fork of ronn. It builds manuals in HTML and Unix man page format from Markdown.

Remmina is a client to use other desktops remotely. RDP, VNC, SPICE, NX, XDMCP, SSH and EXEC network protocols are supported.

Gene Set Enrichment Analysis of P-value based statistics for outlier gene detection in dataset merged from multiple studies.

This package provides a set of annotation maps describing the entire MeSH assembled using data from MeSH.

This package applies several machine learning methods, including SVM, bagSVM, Random Forest and CART to RNA-Seq data.

MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments.

Collect your data on digital marketing campaigns from Awin using the Windsor.ai API <https://windsor.ai/api-fields/>.

Primarily created as an easy and understanding way to do basic sequences surrounding the central dogma of molecular biology.

Easily cache and retrieve computation results. The package works seamlessly across interactive R sessions, R scripts and Rmarkdown documents.

Method for identifying the instar of Curculionid larvae from the observed distribution of the headcapsule size of mature larvae.