Miscellaneous functions used for x-engineering (feature engineering) or for supporting in other packages maintained by Shichen Xie'.

This package performs species distribution modeling for rare species with unprecedented accuracy (Mondanaro et al., 2023 <doi:10.1111/2041-210X.14066>) and finds the area of origin of species and past contact between them taking climatic variability in full consideration (Mondanaro et al., 2025 <doi:10.1111/2041-210X.14478>).

This package performs RNA emulation and active learning proposed by Heo and Sung (2025) <doi:10.1080/00401706.2024.2376173> for multi-fidelity computer experiments. The RNA emulator is particularly useful when the simulations with different fidelity level are nonlinearly correlated. The hyperparameters in the model are estimated by maximum likelihood estimation.

Generate a Core Collection with Principal Component Scoring Strategy (PCSS) using qualitative and/or quantitative trait data according to Hamon and Noirot (1990) <https://www.documentation.ird.fr/hor/fdi:36506>, Noirot et al. (1996) <doi:10.2307/2527837> and Noirot et al. (2003) <https://www.documentation.ird.fr/hor/fdi:010031886>.

Implementing the BDAT tree taper Fortran routines, which were developed for the German National Forest Inventory (NFI), to calculate diameters, volume, assortments, double bark thickness and biomass for different tree species based on tree characteristics and sorting information. See Kublin (2003) <doi:10.1046/j.1439-0337.2003.00183.x> for details.

This package creates and maintains a build process for complex analytic tasks in R. Package allows to easily generate Makefile for the (GNU) make tool, which drives the build process by (in parallel) executing build commands in order to update results accordingly to given dependencies on changed data or updated source files.

In order to make sure that web request ends up in the correct handler function a router is often used. routr is a package implementing a simple but powerful routing functionality for R based servers. It is a fully functional fiery plugin, but can also be used with other httpuv based servers.

This is a package for noise-robust soft clustering of gene expression time-series data (including a graphical user interface).

Proto is an object oriented system using object-based, also called prototype-based, rather than class-based object oriented ideas.

This package does local optimization using two derivatives and trust regions. Guaranteed to converge to local minimum of objective function.

This is a companion package for the book "A Course in Statistics with R" (ISBN 978-1-119-15272-9.)

This package allows users to create CSS grid and flexbox layouts for R/Shiny without needing to write custom CSS.

This package provides counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences.

Ronn-NG is an updated fork of ronn. It builds manuals in HTML and Unix man page format from Markdown.

Remmina is a client to use other desktops remotely. RDP, VNC, SPICE, NX, XDMCP, SSH and EXEC network protocols are supported.

Gene Set Enrichment Analysis of P-value based statistics for outlier gene detection in dataset merged from multiple studies.

This package provides a set of annotation maps describing the entire MeSH assembled using data from MeSH.

MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments.

This package applies several machine learning methods, including SVM, bagSVM, Random Forest and CART to RNA-Seq data.

Collect your data on digital marketing campaigns from Awin using the Windsor.ai API <https://windsor.ai/api-fields/>.

Primarily created as an easy and understanding way to do basic sequences surrounding the central dogma of molecular biology.

Easily cache and retrieve computation results. The package works seamlessly across interactive R sessions, R scripts and Rmarkdown documents.

Method for identifying the instar of Curculionid larvae from the observed distribution of the headcapsule size of mature larvae.

Overload utils::'? to build unary and binary operators from existing functions, piping operators of different precedence, and flexible syntaxes.