Bio::Kseq provides ruby bindings to the kseq.h FASTA and FASTQ parsing code. It provides a fast iterator over sequences and their quality scores.

This package provides functionality to benchmark your CPU and compare against other CPUs. Also provides functions for obtaining system specifications, such as RAM, CPU type, and R version.

This is a lightweight package for computing different kinds of correlations. These correlations include partial correlations, Bayesian correlations, multilevel correlations, polychoric correlations, biweight correlations, distance correlations and more.

Parinfer is a plugin for Kakoune, Vim, Neovim and Emacs that infers parentheses and indentation. This library can be called from other editors that can load dynamic libraries.

The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.

Ruby Bindings for the GNU LibIDN library, an implementation of the Stringprep, Punycode and IDNA specifications. These are used to encode and decode internationalized domain + names according to the IDNA2003 specifications.

Included are the most important parts of the Stringprep, Punycode and IDNA APIs like performing Stringprep processings, encoding to and decoding from Punycode strings and converting entire domain names to and from the ACE encoded form.

This package contains a function to do exact Hardy-Weinburg testing (using Fisher's test) for SNP genotypes as typically obtained in a Genome Wide Association Study (GWAS).

This package allows you to test FTP implementations in ruby. It is a minimal single-client FTP server that can be bound to any arbitrary port on localhost.

Rust-analyzer is a modular compiler frontend for the Rust language. It is a part of a larger rls-2.0 effort to create excellent IDE support for Rust.

This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.

The R package rareMETALS2 is an extension of the R package rareMETALS. It was designed to meta-analyze gene-level association tests for binary trait. While rareMETALS offers a near-complete solution for meta-analysis of gene-level tests for quantitative trait, it does not offer the optimal solution for binary trait. The package rareMETALS2 offers improved features for analyzing gene-level association tests in meta-analyses for binary trait.

This package provides advanced tryCatch and try functions for better error handling (logging, stack trace with source code references and support for post-mortem analysis via dump files).

This package offers quick statistical hypothesis testing for matrix rows/columns. The main goals are speed through vectorization, detailed and user-friendly output, and compatibility with tests implemented in R.

This package performs complex string operations compactly and efficiently. It supports string interpolation jointly with over 50 string operations. It also enhances regular string functions (like grep() and co).

cl-random is a library for generating random draws from various commonly used distributions, and for calculating statistical functions, such as density, distribution and quantiles for these distributions.

Zeitwerk implements constant autoloading with Ruby semantics. Each gem and application may have their own independent autoloader, with its own configuration, inflector, and logger. Supports autoloading, reloading, and eager loading.

Changepoint implements various mainstream and specialised changepoint methods. These methods are suitable for finding single and multiple changepoints within data. Many popular non-parametric and frequentist methods are included as well.

This Common Lisp library focuses on the small set of basic color manipulations (lightening, compliments, etc.) you might use to generate a color palette for a GUI or web page.

HighLine provides a high-level IO library that provides validation, type conversion, and more for command-line interfaces. HighLine also includes a menu system for providing multiple options to the user.

The Polyglot library allows a Ruby module to register a loader for the file type associated with a filename extension, and it augments require to find and load matching files.

Maxitest is a wrapper around Minitest with extra functionality such as timeouts, an mtest executable that can run tests by line number, support for interrupted tests, better backtraces, and more.

Sanitize is a whitelist-based HTML and CSS sanitizer. Given a list of acceptable elements, attributes, and CSS properties, Sanitize will remove all unacceptable HTML and/or CSS from a string.

This package provides methods that simplify the setup of S3 generic functions and S3 methods. Major effort has been made in making definition of methods as simple as possible with a minimum of maintenance for package developers. For example, generic functions are created automatically, if missing, and naming conflict are automatically solved, if possible. The method setMethodS3() is a good start for those who in the future may want to migrate to S4.

This package extends mlr3 with filter methods for feature selection. Besides standalone filter methods built-in methods of any machine-learning algorithm are supported. Partial scoring of multivariate filter methods is supported.