Fits bi-variate ellipses to stable isotope data using Bayesian inference with the aim being to describe and compare their isotopic niche.

This package provides functions for computing geographically weighted regressions are provided, based on work by Chris Brunsdon, Martin Charlton and Stewart Fotheringham.

Fast and regularized version of GWR for large dataset, detailed in Murakami, Tsutsumida, Yoshida, Nakaya, and Lu (2019) <arXiv:1905.00266>.

We provide functions for estimation and inference of nonlinear and non-stationary time series regression using the sieve methods and bootstrapping procedure.

This package provides a simple, light, and robust interface between R and the Scryfall card data API <https://scryfall.com/docs/api>.

This package provides a tool for calculating and drawing "variable trees". Variable trees display information about nested subsets of a data frame.

Obtain the native stack trace and fuse it with R's stack trace for easier debugging of R packages with native code.

Data from 6 gpr files aims to identify differential expressed genes between the beta 7+ and beta 7- memory T helper cells.

Package for assessing the statistical significance of periodic expression based on Fourier analysis and comparison with data generated by different background models.

The purpose of this GO.db annotation package is to provide detailed information about the latest version of the Gene Ontologies.

This package provides helper functions with a consistent interface to coerce and verify the types and shapes of values for input checking.

This package provides a derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell.

Reads, writes and validates mzQC files. The mzQC format is a standardized file format for the exchange, transmission, and archiving of quality metrics derived from biological mass spectrometry data, as defined by the HUPO-PSI (Human Proteome Organisation - Proteomics Standards Initiative) Quality Control working group. See <https://hupo-psi.github.io/mzQC/> for details.

Download and open manifest files provided by the Copernicus Global Land Service data <https://land.copernicus.eu/global/>. The manifest files are available at: <https://land.copernicus.vgt.vito.be/manifest/>. Also see: <https://land.copernicus.eu/global/access/>. Before you can download the data, you will first need to register to create a username and password.

Real Twig is a method to correct branch overestimation in quantitative structure models. Overestimated cylinders are correctly tapered using measured twig diameters of corresponding tree species. Supported quantitative structure modeling software includes TreeQSM', SimpleForest', Treegraph', and aRchi'. Also included is a novel database of twig diameters and tools for fractal analysis of point clouds.

Allows remote access to satellite image time series provided by the web time series service (WTSS) available at servers such as <https://brazildatacube.dpi.inpe.br/wtss/>. The functions include listing the data sets available in WTSS servers, describing the contents of a data set, and retrieving a time series based on spatial location and temporal filters.

This package provides simplified methods for managing classic Rubik's cubes and many other modifications of it (such as NxNxN size cubes, void cubes and 8-coloured cubes - so called octa cubes). Includes functions of handling special syntax for managing such cubes; and different approach to plotting 3D cubes without using external libraries (for example OpenGL').

Perform optimal transport on somatic point mutations and kernel regression hypothesis testing by integrating pathway level similarities at the gene level (Little et al. (2023) <doi:10.1111/biom.13769>). The software implements balanced and unbalanced optimal transport and omnibus tests with C++ across a set of tumor samples and allows for multi-threading to decrease computational runtime.

Cross validate large genetic data while specifying clinical variables that should always be in the model using the function cv(). An ROC plot from the cross validation data with AUC can be obtained using rocplot(), which also can be used to compare different models. Framework was built to handle genetic data, but works for any data.

This package provides a comprehensive R API for querying Apache Solr databases. A Solr core is represented as a data frame or list that supports Solr-side filtering, sorting, transformation and aggregation, all through the familiar base R API. Queries are processed lazily, i.e., a query is only sent to the database when the data are required.

Analyze differences among time series curves with p-value adjustment for multiple comparisons introduced in Oleson et al (2015) <DOI:10.1177/0962280215607411>.

Fit (using Bayesian methods) and simulate mixtures of univariate and bivariate angular distributions. Chakraborty and Wong (2021) <doi:10.18637/jss.v099.i11>.

Proposes Seq2seq Time-Feature Analysis using an Encoder-Decoder to project into latent space and a Forward Network to predict the next sequence.

This package provides functions for reading in and manipulating CRU TS3.21: Climatic Research Unit (CRU) Time-Series (TS) Version 3.21 data.