BASIX provides some efficient C/C++ implementations of native R procedures to speed up calculations in R.

This package provides a simple interface for creating active bindings where the bound function accepts additional arguments.

This package allows you to create Q-Q and Manhattan plots for GWAS data from PLINK results.

This package provides a general-purpose tool for dynamic report generation in R using Literate Programming techniques.

This package provides a cross-platform solution to open files, directories or URLs with their associated programs.

Pcb-rnd is a Printed Circuit Board layout editor, part of the RiNgDove EDA suite.

rocBLAS is the ROCm Basic Linear Algebra Subprograms (BLAS) library. It is implemented in the HIP programming language.

Included here are babel routines for identifying unusual ribosome protected fragment counts given mRNA counts.

Regression for a discrete response, where the conditional distribution is modelled via a discrete Weibull distribution.

Simulation of Electric Vehicles charging sessions using Gaussian models, together with time-series power demand calculations.

This package provides tools to quickly compile taxonomic and distribution data from the Brazilian Flora 2020.

Datasets analysed in the book Antony Unwin (2024, ISBN:978-0367674007) "Getting (more out of) Graphics".

Sequential change-point tests, parameters estimation, and goodness-of-fit tests for generalized Ornstein-Uhlenbeck processes.

Set of relative measures of deprivation for small areas (Lower-layer Super Output Areas) across England.

An R-package for calculating sample size of a survival trial with or without cure fractions.

This package provides tools for phoneticians and phonologists, including functions for normalization and plotting of vowels.

Import, plot, and diagnose results from statistical catch-at-age models, used in fisheries stock assessment.

Fit a spatial-temporal occupancy models using a probit formulation instead of a traditional logit model.

This package provides functions for constructing mathematical models of dynamical systems from measured input-output data.

Estimation of transition probabilities for the illness-death model and or the three-state progressive model.

This package provides R Markdown output formats to use Tufte styles for PDF and HTML output.

This package provides a toolkit for working with Biological Observation Matrix (BIOM) files. Features include reading/writing all BIOM formats, rarefaction, alpha diversity, beta diversity (including UniFrac), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided.

R interface to the CSDP semidefinite programming library. Installs version 6.1.1 of CSDP from the COIN-OR website if required. An existing installation of CSDP may be used by passing the proper configure arguments to the installation command. See the INSTALL file for further details.

This package contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.