The package provides virtual fonts and LaTeX support files for mathematical calligraphic fonts based on the rsfs Adobe Type 1 fonts, with the slant substantially reduced. The output is quite similar to that from the Adobe Mathematical Pi script font.

Expression profiling using microarray technology to prove if Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium by Prado-Lopez et al. (2010) Stem Cells 28:407-418. Full data available at Gene Expression Omnibus series GSE37761.

This package provides a SummarizedExperiment object of read counts for microRNAs across tissues, cell-types, and cancer cell-lines. The read count matrix was prepared and provided by the author of the study: Towards the human cellular microRNAome.

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

ggtreeExtra extends the method for mapping and visualizing associated data on phylogenetic tree using ggtree. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by ggtree with the grammar of ggplot2.

Kramdown is a library for parsing and converting a superset of Markdown. It is completely written in Ruby, supports standard Markdown (with some minor modifications) and various extensions that have been made popular by the PHP Markdown Extra package and Maruku.

i3status-rs is a feature-rich and resource-friendly replacement for i3status, written in pure Rust. It provides a way to display blocks of system information (time, battery status, volume, etc) on the i3 bar. It is also compatible with sway.

This package provides a Type 1 font with images of the 42 counties of Romania, constructed using a general method which is described in detail in the documentation. The package name is an abbreviation of judetele Romaniei (i.e., counties of Romania).

This package provides functions for making low-level API requests to Amazon Web Services. The functions handle building, signing, and sending requests, and receiving responses. They are designed to help build higher-level interfaces to individual services, such as Simple Storage Service (S3).

This package provides a file format for storing tensors that is secure (doesn't allow for code execution), fast and simple to implement. safetensors also enables cross language and cross frameworks compatibility making it an ideal format for storing machine learning model weights.

rJSmin is a javascript minifier written in Python. The minifier is based on the semantics of jsmin.c by Douglas Crockford. The module is a re-implementation aiming for speed, so it can be used at runtime (rather than during a preprocessing step).

TomParse is a TomDoc parser for Ruby. It takes a code comment as input and parses it into a convenient object-oriented structure in accordance with the TomDoc standard. See TomDoc for more information about the TomDoc format.

This package provides functions for differential gene expression analysis of gene expression time-course data. Natural cubic spline regression models are used. Identified genes may further be used for pathway enrichment analysis and/or the reconstruction of time dependent gene regulatory association networks.

This package provides access to the text shaping functionality in the HarfBuzz library and the bidirectional algorithm in the Fribidi library. This is a low-level utility package mainly for graphic devices that expands upon the font tool-set provided by the systemfonts package.

RTNsurvival is a tool for integrating regulons generated by the RTN package with survival information. For a given regulon, the 2-tailed GSEA approach computes a differential Enrichment Score (dES) for each individual sample, and the dES distribution of all samples is then used to assess the survival statistics for the cohort. There are two main survival analysis workflows: a Cox Proportional Hazards approach used to model regulons as predictors of survival time, and a Kaplan-Meier analysis assessing the stratification of a cohort based on the regulon activity. All plots can be fine-tuned to the user's specifications.

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

This package creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. It mimics many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates.

This package provides methods operating on rows and columns of matrices, e.g. rowMedians(), rowRanks(), and rowSds(). There are also some vector-based methods, e.g. binMeans(), madDiff() and weightedMedians(). All methods have been optimized for speed and memory usage.

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".