Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of the temporal patterns of time course data.
Autoregressive-based decomposition of a time series based on the approach in West (1997). Particular cases include the extraction of trend and seasonal components.
An interface to the API for arXiv', a repository of electronic preprints for computer science, mathematics, physics, quantitative biology, quantitative finance, and statistics.
Compute the R-squared measure under the accelerated failure time (AFT) models proposed in Chan et. al. (2018) <doi:10.1080/03610918.2016.1177072>.
This package provides a zero-inflated quasi-Poisson factor model to display similarity between samples visually in a low (2 or 3) dimensional space.
Basic functions for plotting 2D and 3D views of a sphere, by default the Earth with its major coastline, and additional lines and points.
For plant physiologists, converts conductance (e.g. stomatal conductance) to different units: m/s, mol/m^2/s, and umol/m^2/s/Pa.
Calculate taxonomic, functional and phylogenetic diversity measures through Hill Numbers proposed by Chao, Chiu and Jost (2014) <doi:10.1146/annurev-ecolsys-120213-091540>.
Web scraping the <https://www.dallasfed.org> for up-to-date data on international house prices and exuberance indicators. Download data in tidy format.
Quickly generate lorem ipsum placeholder text. Easy to integrate in RMarkdown documents. Includes an RStudio addin to insert lorem ipsum into the current document.
This package provides functions to estimate start and duration of moult from moult data, based on models developed in Underhill and Zucchini (1988, 1990).
An S4 update of the mefa package using sparse matrices for enhanced efficiency. Sparse array-like objects are supported via lists of sparse matrices.
Estimates the multi-level vector autoregression model on time-series data. Three network structures are obtained: temporal networks, contemporaneous networks and between-subjects networks.
To calculate the Minimal Clinically Important Difference by applying the Anchor-based method and the Response shift effect by applying the Then-Test method.
This package provides a method to impute the missingness in categorical data. Details see the paper <doi:10.4310/SII.2020.v13.n1.a2>.
Calculates k-best solutions and costs for an assignment problem following the method outlined in Murty (1968) <doi:10.1287/opre.16.3.682>.
Summarize multiple biomarker responses of aquatic organisms to contaminants using Cliffâ s delta, as described in Pham & Sokolova (2023) <doi:10.1002/ieam.4676>.
This package provides clustering of genes with similar dose response (or time course) profiles. It implements the method described by Lin et al. (2012).
The strip function deletes components of R model outputs that are useless for specific purposes, such as predict[ing], print[ing], summary[izing], etc.
Combine topic modeling and sentiment analysis to identify individual students gaps, and highlight their strengths and weaknesses across predefined competency domains and professional activities.
Density, distribution function, quantile function and random generation for the sum of independent non-identical binomial distribution with parameters \codesize and \codeprob.
Efficient regression analysis under general two-phase sampling, where Phase I includes error-prone data and Phase II contains validated data on a subset.
Function library for processing collective movement data (e.g. fish schools, ungulate herds, baboon troops) collected from GPS trackers or computer vision tracking software.
Return the first four moments, estimation of parameters and sample of the TSMSN distributions (Skew Normal, Skew t, Skew Slash or Skew Contaminated Normal).