SCONE is an R package for comparing and ranking the performance of different normalization schemes for single-cell RNA-seq and other high-throughput analyses.
This package provides functions for working with legends and axis lines of ggplot2, facets that repeat axis lines on all panels, and some knitr extensions.
Joyplots provide a convenient way of visualizing changes in distributions over time or space. This package enables the creation of such plots in ggplot2.
This package provides software to accompany the book "Wavelet Methods for Time Series Analysis", Donald B. Percival and Andrew T. Walden, Cambridge University Press, 2000.
This is a port of the type guesser from the readr package, the so-called readr first edition parsing engine, now superseded by vroom.
This package provides functions for obtaining the density, random variates and maximum likelihood estimates of the Zero-truncated Poisson lognormal distribution and their mixture distribution.
This package uses an innovative network-based approach that will enhance our ability to determine the identities of significant ions detected by LC-MS.
Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of the temporal patterns of time course data.
Autoregressive-based decomposition of a time series based on the approach in West (1997). Particular cases include the extraction of trend and seasonal components.
An interface to the API for arXiv', a repository of electronic preprints for computer science, mathematics, physics, quantitative biology, quantitative finance, and statistics.
Compute the R-squared measure under the accelerated failure time (AFT) models proposed in Chan et. al. (2018) <doi:10.1080/03610918.2016.1177072>.
This package provides a zero-inflated quasi-Poisson factor model to display similarity between samples visually in a low (2 or 3) dimensional space.
Basic functions for plotting 2D and 3D views of a sphere, by default the Earth with its major coastline, and additional lines and points.
For plant physiologists, converts conductance (e.g. stomatal conductance) to different units: m/s, mol/m^2/s, and umol/m^2/s/Pa.
Calculate taxonomic, functional and phylogenetic diversity measures through Hill Numbers proposed by Chao, Chiu and Jost (2014) <doi:10.1146/annurev-ecolsys-120213-091540>.
Web scraping the <https://www.dallasfed.org> for up-to-date data on international house prices and exuberance indicators. Download data in tidy format.
Handling, processing, and analyzing geographic data on species distributions and environmental variables. Read Vilela & Villalobos (2015) <doi:10.1111/2041-210X.12401> for details.
Quickly generate lorem ipsum placeholder text. Easy to integrate in RMarkdown documents. Includes an RStudio addin to insert lorem ipsum into the current document.
An S4 update of the mefa package using sparse matrices for enhanced efficiency. Sparse array-like objects are supported via lists of sparse matrices.
Summarize multiple biomarker responses of aquatic organisms to contaminants using Cliffâ s delta, as described in Pham & Sokolova (2023) <doi:10.1002/ieam.4676>.
Estimates the multi-level vector autoregression model on time-series data. Three network structures are obtained: temporal networks, contemporaneous networks and between-subjects networks.
To calculate the Minimal Clinically Important Difference by applying the Anchor-based method and the Response shift effect by applying the Then-Test method.
This package provides a method to impute the missingness in categorical data. Details see the paper <doi:10.4310/SII.2020.v13.n1.a2>.
This package provides functions to estimate start and duration of moult from moult data, based on models developed in Underhill and Zucchini (1988, 1990).