This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Call the data wrappers for Bursa Metropolitan Municipality's Open Data Portal <https://acikyesil.bursa.bel.tr/>. This will return all datasets stored in different formats.

Defines operating characteristics of Bayesian Adaptive Trials considering a generalised linear model response via Monte Carlo simulations of Bayesian GLM fitted via integrated Laplace approximations (INLA).

This package implements Cragg-Donald (1993) <doi:10.1017/S0266466600007519> and Stock and Yogo (2005) <doi:10.1017/CBO9780511614491.006> tests for weak instruments in R.

Provide functions for reading and writing CSVW - i.e. CSV tables and JSON metadata. The metadata helps interpret CSV by setting the types and variable names.

This package provides functions for the input/output and visualization of medical imaging data in the form of CIFTI files <https://www.nitrc.org/projects/cifti/>.

Reverse and model the effects of changing deposition rates on geological data and rates. Based on Hohmann (2018) <doi:10.13140/RG.2.2.23372.51841> .

This package provides functions to access and retrieve metadata from the Finna API <https://api.finna.fi/>, which aggregates content from Finnish archives, libraries, and museums.

This package creates nomogram visualizations for penalized Cox regression models, with the support of reproducible survival model building, validation, calibration, and comparison for high-dimensional data.

This package provides functions to estimate the intensity function and its derivative of a given order of a multiplicative counting process using the local polynomial method.

The log4r package is meant to provide a fast, lightweight, object-oriented approach to logging in R based on the widely-emulated log4j system and etymology.

Visualize the relationship between linear regression variables and causes of multi-collinearity. Implements the method in Lin et. al. (2020) <doi:10.1080/10618600.2020.1779729>.

The Mass Transportation Distance rank histogram was developed to assess the reliability of scenarios with equal or different probabilities of occurrence <doi:10.1002/we.1872>.

Improved methods to construct prediction intervals for network meta-analysis. The parametric bootstrap and Kenward-Roger-type adjustment by Noma et al. (2022) <forthcoming> are implementable.

This package implements the Principal Components Difference-in-Differences estimators as described in Chan, M. K., & Kwok, S. S. (2022) <doi:10.1080/07350015.2021.1914636>.

This package provides a toolbox for writing knitr', Sweave or other LaTeX'- or markdown'-based reports and to prettify the output of various estimated models.

This package provides function to apply "Subgroup Identification based on Differential Effect Search" (SIDES) method proposed by Lipkovich et al. (2011) <doi:10.1002/sim.4289>.

This package provides a seamless design that combines phase I dose escalation based on toxicity with phase II dose expansion and dose comparison based on efficacy.

This is a simple addin to RStudio that finds all TODO', FIX ME', CHANGED etc. comments in your project and shows them as a markers list.

This package provides functions for the mass-univariate voxelwise analysis of medical imaging data that follows the NIfTI <http://nifti.nimh.nih.gov> format.

This package provides functions for calculating the fetch (length of open water distance along given directions) and estimating wave energy from wind and wave monitoring data.

This package provides computational support for flow over weirs, such as sharp-crested, broad-crested, and embankments. Initially, the package supports broad- and sharp-crested weirs.

This package provides a set of tools for working with Romanian personal numeric codes. The core is a validation function which applies several verification criteria to assess the validity of numeric codes. This is accompanied by functionality for extracting the different components of a personal numeric code. A personal numeric code is issued to all Romanian residents either at birth or when they obtain a residence permit.

Embeds sources and headers from Tina's Random Number Generator ('TRNG') C++ library. Exposes some functionality for easier access, testing and benchmarking into R. Provides examples of how to use parallel RNG with RcppParallel'. The methods and techniques behind TRNG are illustrated in the package vignettes and examples. Full documentation is available in Bauke (2021) <https://github.com/rabauke/trng4/blob/v4.23.1/doc/trng.pdf>.