Multivariate time series analysis based on Generalized Space-Time Autoregressive Model by Ruchjana et al.(2012) <doi:10.1063/1.4724118>.

This package provides a collection of palettes and themes for ggplot2', offering a light, pastel aesthetic. Syntax follows the viridis package.

Encode and decode the Google Encoded Polyline Algorithm Format. See <https://developers.google.com/maps/documentation/utilities/polylinealgorithm> for more information.

Maximum likelihood estimation of log-binomial regression with special functionality when the MLE is on the boundary of the parameter space.

Targeted Maximum Likelihood Estimation ('TMLE') of treatment/censoring specific mean outcome or marginal structural model for point-treatment and longitudinal data.

This package implements the MVOPR (Multi-View Orthogonal Projection Regression) method for robust variable selection and integration of multi-modality data.

This GUI for the mi package walks the user through the steps of multiple imputation and the analysis of completed data.

Create vectors with sticky flags for elements that should not be displayed. Numeric vectors have basic subset and arithmetic methods implemented.

Generates multivariate imputations using sequential regression with L2 penalty. For more details see Zahid and Heumann (2018) <doi:10.1177/0962280218755574>.

Connects to Google cloud vision <https://cloud.google.com/vision> to perform label detection and repurpose this feature for image classification.

This package provides a native R client library for querying the Prometheus time-series database, using the PromQL query language.

Qiita is a technical knowledge sharing and collaboration platform for programmers. See <https://qiita.com/api/v2/docs> for more information.

This package provides a consistent interface to encrypt and decrypt strings, R objects and files using symmetric and asymmetric key encryption.

This package provides functions to compute and plot tracheidograms, as in De Soto et al. (2011) <doi:10.1139/x11-045>.

This package provides functions to manage taxonomy when lineages are described with strings and ranks separated with special patterns like "|*__" or ";*__".

This is a package for inference of protein activity from gene expression data. It includes the VIPER and msVIPER algorithms

Reads, writes and validates mzQC files. The mzQC format is a standardized file format for the exchange, transmission, and archiving of quality metrics derived from biological mass spectrometry data, as defined by the HUPO-PSI (Human Proteome Organisation - Proteomics Standards Initiative) Quality Control working group. See <https://hupo-psi.github.io/mzQC/> for details.

Download and open manifest files provided by the Copernicus Global Land Service data <https://land.copernicus.eu/global/>. The manifest files are available at: <https://land.copernicus.vgt.vito.be/manifest/>. Also see: <https://land.copernicus.eu/global/access/>. Before you can download the data, you will first need to register to create a username and password.

Real Twig is a method to correct branch overestimation in quantitative structure models. Overestimated cylinders are correctly tapered using measured twig diameters of corresponding tree species. Supported quantitative structure modeling software includes TreeQSM', SimpleForest', Treegraph', and aRchi'. Also included is a novel database of twig diameters and tools for fractal analysis of point clouds.

Reads, writes, validates, converts, and manipulates quantitative polymerase chain reaction (qPCR) data through the Real-Time PCR Data Markup Language ('RDML') application programming interface (API), using S7 objects. Includes an extensible file-format registry, vendor and tabular-data importers, RDES import and export, fluorescence-table helpers, semantic validation, and compatibility wrappers for the historical RDML API.

Cross validate large genetic data while specifying clinical variables that should always be in the model using the function cv(). An ROC plot from the cross validation data with AUC can be obtained using rocplot(), which also can be used to compare different models. Framework was built to handle genetic data, but works for any data.

This package provides a comprehensive R API for querying Apache Solr databases. A Solr core is represented as a data frame or list that supports Solr-side filtering, sorting, transformation and aggregation, all through the familiar base R API. Queries are processed lazily, i.e., a query is only sent to the database when the data are required.

Perform optimal transport on somatic point mutations and kernel regression hypothesis testing by integrating pathway level similarities at the gene level (Little et al. (2023) <doi:10.1111/biom.13769>). The software implements balanced and unbalanced optimal transport and omnibus tests with C++ across a set of tumor samples and allows for multi-threading to decrease computational runtime.

The Rearrangement Correlation Coefficient is an adjusted version of Pearson's correlation coefficient that accurately measures monotonic dependence relationships, including both linear and nonlinear associations. This method addresses the underestimation problem of classical correlation coefficients in nonlinear monotonic scenarios through improved statistical bounds derived from rearrangement inequalities. For more details, see Ai (2024) <doi:10.52202/079017-1180>.