This package allows building the hierarchy of domains starting from Hi-C data. Each hierarchical level is identified by a minimum value of physical insulation between neighboring domains.

This package provides functions and data accompanying the second edition of the book "Data Mining with R, learning with case studies" by Luis Torgo, published by CRC Press.

This package provides methods for species distribution modeling, i.e., predicting the environmental similarity of any site to that of the locations of known occurrences of a species.

This package provides tools for reading .xls and .sbj files which are written by the proprietary program z-Tree for developing and carrying out economic experiments.

This is a generic data receiver, mainly for decoding radio transmissions from devices on the 433 MHz, 868 MHz, 315 MHz, 345 MHz and 915 MHz ISM bands.

Integrates population dynamics and dispersal into a mechanistic virtual species simulator. The package can be used to study the effects of environmental change on population growth and range shifts. It allows for simple and straightforward definition of population dynamics (including positive density dependence), extensive possibilities for defining dispersal kernels, and the ability to generate virtual ecologist data. Learn more about the rangr at <https://docs.ropensci.org/rangr/>.

Embeds sources and headers from Tina's Random Number Generator ('TRNG') C++ library. Exposes some functionality for easier access, testing and benchmarking into R. Provides examples of how to use parallel RNG with RcppParallel'. The methods and techniques behind TRNG are illustrated in the package vignettes and examples. Full documentation is available in Bauke (2021) <https://github.com/rabauke/trng4/blob/v4.23.1/doc/trng.pdf>.

Tool-set to support Bayesian evidence synthesis. This includes meta-analysis, (robust) prior derivation from historical data, operating characteristics and analysis (1 and 2 sample cases). Please refer to Weber et al. (2021) <doi:10.18637/jss.v100.i19> for details on applying this package while Neuenschwander et al. (2010) <doi:10.1177/1740774509356002> and Schmidli et al. (2014) <doi:10.1111/biom.12242> explain details on the methodology.

mpv is a general-purpose audio and video player. It is a fork of mplayer2 and MPlayer. It shares some features with the former projects while introducing many more.

This package contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.

Wraps the AT Protocol (Authenticated Transfer Protocol) behind Bluesky <https://bsky.social>. Functions can be used for, among others, retrieving posts and followers from the network or posting content.

This package implements the adaptive smoothing spline estimator for the function-on-function linear regression model described in Centofanti et al. (2023) <doi:10.1007/s00180-022-01223-6>.

Fits the Bayesian partial least squares regression model introduced in Urbas et al. (2024) <doi:10.1214/24-AOAS1947>. Suitable for univariate and multivariate regression with high-dimensional data.

Implementations of canonical associative learning models, with tools to run experiment simulations, estimate model parameters, and compare model representations. Experiments and results are represented using S4 classes and methods.

Bayesian fit of a Dirichlet Process Mixture with hierarchical multivariate skew normal kernels and coarsened posteriors. For more information, see Gorsky, Chan and Ma (2020) <arXiv:2001.06451>.

Perform a Bayesian estimation of the exploratory deterministic input, noisy and gate (EDINA) cognitive diagnostic model described by Chen et al. (2018) <doi:10.1007/s11336-017-9579-4>.

Add a scroll back to top Font Awesome icon <https://fontawesome.com/> in rmarkdown documents and shiny apps thanks to jQuery GoTop <https://scottdorman.blog/jquery-gotop/>.

This package provides tools for multivariate nonparametrics, as location tests based on marginal ranks, spatial median and spatial signs computation, Hotelling's T-test, estimates of shape are implemented.

Mixture modelling of one-dimensional data using combinations of left-truncated Gamma, Weibull, and Lognormal Distributions. Blostein, Martin & Miljkovic, Tatjana. (2019) <doi:10.1016/j.insmatheco.2018.12.001>.

This package provides the method for computing the local partial autocorrelation function for locally stationary wavelet time series from Killick, Knight, Nason, Eckley (2020) <doi:10.1214/20-EJS1748>.

This package provides a suite of functions for reading in a rate file in XML format, stratify a cohort, and calculate SMRs from the stratified cohort and rate file.

We can calculate directly used this package the Minimal Clinically Important Difference by applying the Anchor-based method and the Response shift effect by applying the Then-Test method.

This package provides a set of classes and methods to set up and run multi-species, trait based and community size spectrum ecological models, focused on the marine environment.

This package provides a method for the quantitative prediction with much predictors. This package provides functions to construct the quantitative prediction model with less overfitting and robust to noise.