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Replication Rate (RR) is the probability of replicating a statistically significant association in genome-wide association studies. This R-package provide the estimation method for replication rate which makes use of the summary statistics from the primary study. We can use the estimated RR to determine the sample size of the replication study, and to check the consistency between the results of the primary study and those of the replication study.

The Stuttgart Neural Network Simulator (SNNS) is a library containing many standard implementations of neural networks. This package wraps the SNNS functionality to make it available from within R. Using the RSNNS low-level interface, all of the algorithmic functionality and flexibility of SNNS can be accessed. Furthermore, the package contains a convenient high-level interface, so that the most common neural network topologies and learning algorithms integrate seamlessly into R.

RolDE detects longitudinal differential expression between two conditions in noisy high-troughput data. Suitable even for data with a moderate amount of missing values.RolDE is a composite method, consisting of three independent modules with different approaches to detecting longitudinal differential expression. The combination of these diverse modules allows RolDE to robustly detect varying differences in longitudinal trends and expression levels in diverse data types and experimental settings.

Analysis of moderation (ANOMO) method conceptualizes the difference and equivalence tests as a moderation problem to test the difference and equivalence of two means (or two effects in two studies).

Generates bivariate residual plots with simulation polygons for any diagnostics and bivariate model from which functions to extract the desired diagnostics, simulate new data and refit the models are available.

Tests the parallel regression assumption wit the brant test by Brant (1990) <doi: 10.2307/2532457> for ordinal logit models generated with the function polr() from the package MASS'.

The cgAUC can calculate the AUC-type measure of Obuchowski(2006) when gold standard is continuous, and find the optimal linear combination of variables with respect to this measure.

This package provides a convenient interface for making requests directly to the Civis Platform API <https://www.civisanalytics.com/platform/>. Full documentation available here <https://civisanalytics.github.io/civis-r/>.

Client for CKAN API (<https://ckan.org/>). Includes interface to CKAN APIs for search, list, show for packages, organizations, and resources. In addition, provides an interface to the datastore API.

This package provides methods and functions to implement a Recommendation System based on Collaborative Filtering Methodology. See Aggarwal (2016) <doi:10.1007/978-3-319-29659-3> for an overview.

Bayesian inference algorithms based on the population-based "differential evolution" (DE) algorithm. Users can obtain posterior mode (MAP) estimates via DEMAP, posterior samples via DEMCMC, and variational approximations via DEVI.

Useful functions for various DDI (Data Documentation Initiative) related inputs and outputs. Converts data files to and from DDI, SPSS, Stata, SAS, R and Excel, including user declared missing values.

Algorithm to handle with optimal subset selection for distributed local principal component analysis. The philosophy of the package is described in Guo G. (2020) <doi:10.1080/02331888.2020.1823979>.

This package contains utilities and functions for the cleaning, processing and management of patient level public health data for surveillance and analysis held by the UK Health Security Agency, UKHSA.

Fit models of modularity to morphological landmarks. Perform model selection on results. Fit models with a single within-module correlation or with separate within-module correlations fitted to each module.

FastGit <https://doc.fastgit.org/> works like a mirror of GitHub to make significant acceleration. fgitR is a package to do git operation with FastGit automatically.

Collection of utility functions used in the KEHRA project (see http://www.brunel.ac.uk/ife/britishcouncil). It refers to the multidimensional analysis of air pollution, weather and health data.

An efficient procedure for feature selection for generalized linear models with L0 penalty, including linear, logistic, Poisson, gamma, inverse Gaussian regression. Adaptive ridge algorithms are used to fit the models.

An interface to LuaJIT <https://luajit.org>, a just-in-time compiler for the Lua scripting language <https://www.lua.org>. Allows users to run Lua code from R'.

This package provides a rmarkdown template that supports company logo, contact info, watermarks and more. Currently restricted to Latex'/'Markdown'; a similar HTML theme will be added in the future.

This package provides a set of convenience functions as well as geographical/political data about Nigeria, aimed at simplifying work with data and information that are specific to the country.

Builds general noise SVR models using Naive Online R Minimization Algorithm, NORMA, an optimization method based on classical stochastic gradient descent suitable for computing SVR models in an online setting.

Simulates somatic single base substitutions carried in cancer genomes. By only providing a human reference genome, substitutions that result from mutational processes operative in every cancer genome can be generated.