This is a package for operations on triangular meshes based on VCGLIB. This package integrates nicely with the R-package rgl to render the meshes processed by Rvcg. The Visualization and Computer Graphics Library (VCG for short) is a library for manipulation, processing and displaying with OpenGL of triangle and tetrahedral meshes.

Toolkit for identification and statistical testing of RNA editing signals from within R. Provides support for identifying sites from bulk-RNA and single cell RNA-seq datasets, and general methods for extraction of allelic read counts from alignment files. Facilitates annotation and exploratory analysis of editing signals using Bioconductor packages and resources.

This package provides tools to process and print UTF-8 encoded international text (Unicode). Input, validate, normalize, encode, format, and display.

This package provides functions and datasets for the book "Modern Applied Statistics with S" (4th edition, 2002) by Venables and Ripley.

This package provides zm, a utility that allows you to zoom/navigate any plot when called with any active plot.

This package contains methods described by Dennis Helsel in his book Nondetects and Data Analysis: Statistics for Censored Environmental Data.

This package contains data structures and algorithms for sparse arrays and matrices, based on index arrays and simple triplet representations, respectively.

RE is a small, portable, lightweight, and quick, regular expression library for Common Lisp. It is a non-recursive, backtracing VM.

m stands for metal, a better test/unit and minitest test runner that can run tests by line number.

This package provides an enum-type representation of vectors and representation of intervals, including a method of coercing variables in data frames.

This package guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.

This package provides various methods to conduct Spatio-Temporal Analysis and Modelling, including Exploratory Spatio-Temporal Analysis and Inferred Spatio-Temporal Modelling.

This package provides utilities for processing Rd objects and files. Extract argument descriptions and other parts of the help pages of functions.

The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

This package provides an implementation of robust nonnegative matrix factorization (rNMF). The rNMF algorithm decomposes a nonnegative high dimension data matrix into the product of two low rank nonnegative matrices, while detecting and trimming outliers. The main function is rnmf(). The package also includes a visualization tool, see(), that arranges and prints vectorized images.

This R package is providing functions to perform geneset significance analysis over simple cross-sectional data between 2 and 5 phenotypes of interest.

This package contains functions for the efficient design of factorial two-colour microarray experiments and for the statistical analysis of factorial microarray data.

This package provides tools to read, write, create, and manipulate DESCRIPTION files. It is intended for packages that create or manipulate other packages.

This package provides software for the book Spectral Analysis for Physical Applications, Donald B. Percival and Andrew T. Walden, Cambridge University Press, 1993.

This package provides a model-based background correction method, which incorporates the negative control beads to pre-process Illumina BeadArray data.

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

This package provides functions for normalisation of two-color microarrays by optimised local regression and for detection of artefacts in microarray data.

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

This package contains the Rook specification and convenience software for building and running Rook applications. A Rook application is an R reference class object that implements a call method or an R closure that takes exactly one argument, an environment, and returns a list with three named elements: the status, the headers, and the body.