Reconstructing Interlog Protein Network (IPN) integrated from several Protein protein Interaction Networks (PPINs). Using this package, overlaying different PPINs to mine conserved common networks between diverse species will be applicable.

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.

Tests the parallel regression assumption wit the brant test by Brant (1990) <doi: 10.2307/2532457> for ordinal logit models generated with the function polr() from the package MASS'.

Generates bivariate residual plots with simulation polygons for any diagnostics and bivariate model from which functions to extract the desired diagnostics, simulate new data and refit the models are available.

This package provides a convenient interface for making requests directly to the Civis Platform API <https://www.civisanalytics.com/platform>. Full documentation available here <https://civisanalytics.github.io/civis-r/>.

Client for CKAN API (<https://ckan.org/>). Includes interface to CKAN APIs for search, list, show for packages, organizations, and resources. In addition, provides an interface to the datastore API.

Create, query, and modify causal graphs. caugi (Causal Graph Interface) is a causality-first, high performance graph package that provides a simple interface to build, structure, and examine causal relationships.

Bayesian fit of a Dirichlet Process Mixture with hierarchical multivariate skew normal kernels and coarsened posteriors. For more information, see Gorsky, Chan and Ma (2024) <doi:10.1214/22-BA1356>.

The cgAUC can calculate the AUC-type measure of Obuchowski(2006) when gold standard is continuous, and find the optimal linear combination of variables with respect to this measure.

Bayesian inference algorithms based on the population-based "differential evolution" (DE) algorithm. Users can obtain posterior mode (MAP) estimates via DEMAP, posterior samples via DEMCMC, and variational approximations via DEVI.

Useful functions for various DDI (Data Documentation Initiative) related inputs and outputs. Converts data files to and from DDI, SPSS, Stata, SAS, R and Excel, including user declared missing values.

Algorithm to handle with optimal subset selection for distributed local principal component analysis. The philosophy of the package is described in Guo G. (2020) <doi:10.1080/02331888.2020.1823979>.

Fit models of modularity to morphological landmarks. Perform model selection on results. Fit models with a single within-module correlation or with separate within-module correlations fitted to each module.

This package contains utilities and functions for the cleaning, processing and management of patient level public health data for surveillance and analysis held by the UK Health Security Agency, UKHSA.

FastGit <https://doc.fastgit.org/> works like a mirror of GitHub to make significant acceleration. fgitR is a package to do git operation with FastGit automatically.

This package provides tools to calculate Mean Corpuscular Volume, Mean Corpuscular Hemoglobin, and Mean Corpuscular Hemoglobin Concentration, which are essential for assessing red blood cell health and diagnosing blood disorders.

Collection of utility functions used in the KEHRA project (see http://www.brunel.ac.uk/ife/britishcouncil). It refers to the multidimensional analysis of air pollution, weather and health data.

An interface to LuaJIT <https://luajit.org>, a just-in-time compiler for the Lua scripting language <https://www.lua.org>. Allows users to run Lua code from R'.

An efficient procedure for feature selection for generalized linear models with L0 penalty, including linear, logistic, Poisson, gamma, inverse Gaussian regression. Adaptive ridge algorithms are used to fit the models.

This package implements a high dimensional mediation analysis algorithm using Local False Discovery Rates. The methodology is described in Roy and Zhang (2024) <doi:10.48550/arXiv.2402.13933>.

This package provides a rmarkdown template that supports company logo, contact info, watermarks and more. Currently restricted to Latex'/'Markdown'; a similar HTML theme will be added in the future.

This package provides a set of convenience functions as well as geographical/political data about Nigeria, aimed at simplifying work with data and information that are specific to the country.

It provides the density and random number generator for the Scale-Shape Mixtures of Skew-Normal Distributions proposed by Jamalizadeh and Lin (2016) <doi:10.1007/s00180-016-0691-1>.

An implementation of statistical tools for the analysis of rotation-valued time series and functional data. It relies on pre-existing quaternion data structure provided by the Eigen C++ library.