Uses thresholded partial least squares algorithm to create a regression or classification model. For more information, see Lee, Bradlow, and Kable <doi:10.1016/j.crmeth.2022.100227>.

This package provides easy access to a curated selection of pre-processed data sets relevant to the COVID-19 outbreak in the UK for teaching and demonstration purposes.

This package provides a tool for calculating and drawing "variable trees". Variable trees display information about nested subsets of a data frame. <doi:10.18637/jss.v114.i04>.

This package provides a continuous version of the receiver operating characteristics (ROC) curve to assess both classification and continuity performances of biomarkers, diagnostic tests, or risk prediction models.

Another implementation of general regression neural network in R based on Specht (1991) <DOI:10.1109/72.97934>. It is applicable to the functional approximation or the classification.

mpv is a general-purpose audio and video player. It is a fork of mplayer2 and MPlayer. It shares some features with the former projects while introducing many more.

RolDE detects longitudinal differential expression between two conditions in noisy high-troughput data. Suitable even for data with a moderate amount of missing values.RolDE is a composite method, consisting of three independent modules with different approaches to detecting longitudinal differential expression. The combination of these diverse modules allows RolDE to robustly detect varying differences in longitudinal trends and expression levels in diverse data types and experimental settings.

The Stuttgart Neural Network Simulator (SNNS) is a library containing many standard implementations of neural networks. This package wraps the SNNS functionality to make it available from within R. Using the RSNNS low-level interface, all of the algorithmic functionality and flexibility of SNNS can be accessed. Furthermore, the package contains a convenient high-level interface, so that the most common neural network topologies and learning algorithms integrate seamlessly into R.

This package provides a dependency-light OpenTimelineIO (OTIO) <https://github.com/AcademySoftwareFoundation/OpenTimelineIO> document layer in pure R. Provides constructors for the OTIO object model (timelines, tracks, clips, gaps, media references, rational times and time ranges), functional builders that return new objects, and readers and writers for canonical .otio files through jsonlite'. The optional RcppOTIO package validates output against the real OpenTimelineIO C++ library. No compiled code.

This package provides tools for quantitative plant disease epidemiology, including functional analysis of disease progress curves, spatial epidemiology, disease quantification, and weather-driven epidemic analysis. The package also serves as an educational resource and companion to the book "R for Plant Disease Epidemiology" (R4PDE). Several functions are based on classical and contemporary methods, including those discussed in Laurence V. Madden, Gareth Hughes, and Frank van den Bosch (2007) <doi:10.1094/9780890545058>.

This package implements robust median-based Bayesian linear growth curve models for complete data and for data with Missing Completely at Random (MCAR), Missing At Random (MAR), or Missing Not At Random (MNAR) mechanisms. Models are fitted using rjags through JAGS and posterior summaries are computed with coda'. The main function allows users to specify outcome variables, auxiliary variables for MNAR missingness models, prior hyperparameters, and initial values directly through function arguments.

Runitor runs the supplied command, captures its output, and based on its exit code reports successful or failed execution to https://healthchecks.io or your private instance.

Milo performs single-cell differential abundance testing. Cell states are modelled as representative neighbourhoods on a nearest neighbour graph. Hypothesis testing is performed using a negative bionomial generalized linear model.

ASICS quantifies concentration of metabolites in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty.

This package provides the ASCAT R package that can be used to infer tumour purity, ploidy and allele-specific copy number profiles.

How fast can you type R functions on your keyboard? Find out by running a zty.pe game: export R functions as instructions to type to destroy opponents' vessels.

This package provides two high quality and fast PPRNGs that may be used in an OpenMP parallel environment. In addition, there is a generator for one dimensional low-discrepancy sequence.

This is a package for simplified document database access and manipulation, providing a common API across supported NoSQL databases Elasticsearch, CouchDB, MongoDB as well as SQLite/JSON1, PostgreSQL, and DuckDB.

This package provides the header files for a stripped-down version of the plog header-only C++ logging library, and a method to log to R's standard error stream.

This package provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms.

This package uses bayesian network learning to detect relationships between Gene Modules detected by WGCNA and immune cell signatures defined by xCell. It is a hypothesis generating tool.

Wraps the AT Protocol (Authenticated Transfer Protocol) behind Bluesky <https://bsky.social>. Functions can be used for, among others, retrieving posts and followers from the network or posting content.

This package contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.