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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-jeek 1.1.1
Propagated dependencies: r-pcapp@2.0-5 r-lpsolve@5.6.23 r-igraph@2.2.1
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/QData/jeek
Licenses: GPL 2
Synopsis: Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models
Description:

This package provides a fast and scalable joint estimator for integrating additional knowledge in learning multiple related sparse Gaussian Graphical Models (JEEK). The JEEK algorithm can be used to fast estimate multiple related precision matrices in a large-scale. For instance, it can identify multiple gene networks from multi-context gene expression datasets. By performing data-driven network inference from high-dimensional and heterogeneous data sets, this tool can help users effectively translate aggregated data into knowledge that take the form of graphs among entities. Please run demo(jeek) to learn the basic functions provided by this package. For further details, please read the original paper: Beilun Wang, Arshdeep Sekhon, Yanjun Qi "A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models" (ICML 2018) <arXiv:1806.00548>.

r-jwileymisc 1.4.4
Propagated dependencies: r-vgam@1.1-13 r-scales@1.4.0 r-robustbase@0.99-6 r-rlang@1.1.6 r-psych@2.5.6 r-multcompview@0.1-10 r-mice@3.18.0 r-mgcv@1.9-4 r-mass@7.3-65 r-lme4@1.1-37 r-lavaan@0.6-20 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-gamlss@5.5-0 r-fst@0.9.8 r-extraoperators@0.3.0 r-emmeans@2.0.0 r-digest@0.6.39 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://joshuawiley.com/JWileymisc/
Licenses: GPL 3+
Synopsis: Miscellaneous Utilities and Functions
Description:

Miscellaneous tools and functions, including: generate descriptive statistics tables, format output, visualize relations among variables or check distributions, and generic functions for residual and model diagnostics.

r-jmvcore 2.7.7
Propagated dependencies: r-rlang@1.1.6 r-r6@2.6.1 r-jsonlite@2.0.0 r-base64enc@0.1-3
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://www.jamovi.org
Licenses: GPL 2+
Synopsis: Dependencies for the 'jamovi' Framework
Description:

This package provides a framework for creating rich interactive analyses for the jamovi platform (see <https://www.jamovi.org> for more information).

r-jointcomprisk 0.1.1
Propagated dependencies: r-survival@3.8-3 r-rlang@1.1.6 r-magrittr@2.0.4 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/cathyzzzhang/jointCompRisk
Licenses: Expat
Synopsis: Joint Inference for Competing Risks Data Using Multiple Endpoints
Description:

This package provides tools for competing risks trials that allow simultaneous inference on recovery and mortality endpoints. Provides data preparation helpers, standard cumulative incidence estimators (restricted mean time gained/lost), and severity weighted extensions that integrate longitudinal ordinal outcomes to summarise treatment benefit. Methods follow Wen, Hu, and Wang (2023) Biometrics 79(3):1635-1645 <doi:10.1111/biom.13752>.

r-jmbig 0.1.3
Propagated dependencies: r-survival@3.8-3 r-rstanarm@2.32.2 r-nlme@3.1-168 r-joinerml@0.4.7 r-jmbayes2@0.5-7 r-ggplot2@4.0.1 r-fastjm@1.5.3 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://cran.r-project.org/package=jmBIG
Licenses: GPL 3
Synopsis: Joint Longitudinal and Survival Model for Big Data
Description:

This package provides analysis tools for big data where the sample size is very large. It offers a suite of functions for fitting and predicting joint models, which allow for the simultaneous analysis of longitudinal and time-to-event data. This statistical methodology is particularly useful in medical research where there is often interest in understanding the relationship between a longitudinal biomarker and a clinical outcome, such as survival or disease progression. This can be particularly useful in a clinical setting where it is important to be able to predict how a patient's health status may change over time. Overall, this package provides a comprehensive set of tools for joint modeling of BIG data obtained as survival and longitudinal outcomes with both Bayesian and non-Bayesian approaches. Its versatility and flexibility make it a valuable resource for researchers in many different fields, particularly in the medical and health sciences.

r-jsonstat 0.0.2
Propagated dependencies: r-rlang@1.1.6 r-jsonlite@2.0.0 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/zedoul/jsonstat
Licenses: Expat
Synopsis: Interface to 'JSON-stat'
Description:

Interface to JSON-stat <https://json-stat.org/>, a simple lightweight JSON format for data dissemination.

r-jico 0.1
Propagated dependencies: r-rlist@0.4.6.2 r-nleqslv@3.3.5 r-matrix@1.7-4 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://cran.r-project.org/package=JICO
Licenses: GPL 3+
Synopsis: Joint and Individual Regression
Description:

An R package that implements the JICO algorithm [Wang, P., Wang, H., Li, Q., Shen, D., & Liu, Y. (2024). <Journal of Computational and Graphical Statistics, 33(3), 763-773>]. It aims at solving the multi-group regression problem. The algorithm decomposes the responses from multiple groups into shared and group-specific components, which are driven by low-rank approximations of joint and individual structures from the covariates respectively.

r-jaatha 3.2.5
Propagated dependencies: r-r6@2.6.1 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/statgenlmu/jaatha
Licenses: GPL 3+
Synopsis: Simulation-Based Maximum Likelihood Parameter Estimation
Description:

An estimation method that can use computer simulations to approximate maximum-likelihood estimates even when the likelihood function can not be evaluated directly. It can be applied whenever it is feasible to conduct many simulations, but works best when the data is approximately Poisson distributed. It was originally designed for demographic inference in evolutionary biology (Naduvilezhath et al., 2011 <doi:10.1111/j.1365-294X.2011.05131.x>, Mathew et al., 2013 <doi:10.1002/ece3.722>). It has optional support for conducting coalescent simulation using the coala package.

r-juicedown 0.1.2
Propagated dependencies: r-xml2@1.5.0 r-xfun@0.54 r-stringr@1.6.0 r-sass@0.4.10 r-rvest@1.0.5 r-rlang@1.1.6 r-markdown@2.0 r-knitr@1.50 r-juicyjuice@0.1.0 r-glue@1.8.0 r-dplyr@1.1.4 r-clipr@0.8.0
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://kenjisato.github.io/juicedown/
Licenses: Expat
Synopsis: 'juice' + 'markdown': Convert 'R Markdown' into 'HTML' with Inline Styles
Description:

This package provides a convenience tool to create HTML with inline styles using juicyjuice and markdown packages. It is particularly useful when working on a content management system (CMS) whose code editor eliminates style and link tags. The main use case of the package is the learning management system, Moodle'. Additional helper functions for teaching purposes are provided. Learn more about juicedown at <https://kenjisato.github.io/juicedown/>.

r-jointmeancov 0.1.0
Propagated dependencies: r-glasso@1.11
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://cran.r-project.org/package=jointMeanCov
Licenses: GPL 2
Synopsis: Joint Mean and Covariance Estimation for Matrix-Variate Data
Description:

Jointly estimates two-group means and covariances for matrix-variate data and calculates test statistics. This package implements the algorithms defined in Hornstein, Fan, Shedden, and Zhou (2018) <doi:10.1080/01621459.2018.1429275>.

r-jmv 2.7.7
Propagated dependencies: r-vcdextra@0.8.7 r-vcd@1.4-13 r-rocr@1.0-11 r-r6@2.6.1 r-psych@2.5.6 r-pmcmr@4.4 r-nnet@7.3-20 r-mvnormtest@0.1-9-3 r-multcomp@1.4-29 r-matrixstats@1.5.0 r-mass@7.3-65 r-magrittr@2.0.4 r-lavaan@0.6-20 r-jmvcore@2.7.7 r-gparotation@2025.3-1 r-ggridges@0.5.7 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-ggally@2.4.0 r-emmeans@2.0.0 r-dplyr@1.1.4 r-car@3.1-3 r-bayesfactor@0.9.12-4.7 r-afex@1.5-0
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://cran.r-project.org/package=jmv
Licenses: GPL 2+
Synopsis: The 'jamovi' Analyses
Description:

This package provides a suite of common statistical methods such as descriptives, t-tests, ANOVAs, regression, correlation matrices, proportion tests, contingency tables, and factor analysis. This package is also useable from the jamovi statistical spreadsheet (see <https://www.jamovi.org> for more information).

r-jrsicklsnmf 1.2.3
Propagated dependencies: r-umap@0.2.10.0 r-scran@1.38.0 r-rlang@1.1.6 r-rdpack@2.6.4 r-rcppprogress@0.4.2 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-pbapply@1.7-4 r-matrix@1.7-4 r-mass@7.3-65 r-kknn@1.4.1 r-irlba@2.3.5.1 r-igraph@2.2.1 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-foreach@1.5.2 r-factoextra@1.0.7 r-data-table@1.17.8 r-clvalid@0.7 r-cluster@2.1.8.1
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://cran.r-project.org/package=jrSiCKLSNMF
Licenses: GPL 3
Synopsis: Multimodal Single-Cell Omics Dimensionality Reduction
Description:

This package provides methods to perform Joint graph Regularized Single-Cell Kullback-Leibler Sparse Non-negative Matrix Factorization ('jrSiCKLSNMF', pronounced "junior sickles NMF") on quality controlled single-cell multimodal omics count data. jrSiCKLSNMF specifically deals with dual-assay scRNA-seq and scATAC-seq data. This package contains functions to extract meaningful latent factors that are shared across omics modalities. These factors enable accurate cell-type clustering and facilitate visualizations. Methods for pre-processing, clustering, and mini-batch updates and other adaptations for larger datasets are also included. For further details on the methods used in this package please see Ellis, Roy, and Datta (2023) <doi:10.3389/fgene.2023.1179439>.

r-jqbr 1.0.4
Propagated dependencies: r-shiny@1.11.1 r-jsonlite@2.0.0 r-htmltools@0.5.8.1
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/hfshr/jqbr
Licenses: Expat
Synopsis: 'jQuery QueryBuilder' Input for 'Shiny'
Description:

This package provides a highly configurable jQuery plugin offering a simple interface to create complex queries/filters in Shiny'. The outputted rules can easily be parsed into a set of R and/or SQL queries and used to filter data. Custom parsing of the rules is also supported. For more information about jQuery QueryBuilder see <https://querybuilder.js.org/>.

r-jvcoords 1.0.3
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/seehuhn/jvcoords
Licenses: GPL 3
Synopsis: Principal Component Analysis (PCA) and Whitening
Description:

This package provides functions to standardize and whiten data, and to perform Principal Component Analysis (PCA). The main advantage of this package over alternatives like prcomp() is, that jvcoords makes it easy to convert (additional) data between the original and the transformed coordinates. The package also provides a class coords, which can represent affine coordinate transformations. This class forms the basis of the transformations provided by the package, but can also be used independently. The implementation has been optimized to be of comparable speed (and sometimes even faster) than existing alternatives.

r-jstree 1.2
Propagated dependencies: r-jsonlite@2.0.0 r-htmlwidgets@1.6.4 r-htmltools@0.5.8.1 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/yonicd/jsTree
Licenses: Expat
Synopsis: Create Interactive Trees with the 'jQuery' 'jsTree' Plugin
Description:

Create and customize interactive trees using the jQuery jsTree <https://www.jstree.com/> plugin library and the htmlwidgets package. These trees can be used directly from the R console, from RStudio', in Shiny apps and R Markdown documents.

r-jpstat 0.4.0
Propagated dependencies: r-vctrs@0.6.5 r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-stickyr@0.1.2 r-rlang@1.1.6 r-purrr@1.2.0 r-pillar@1.11.1 r-navigatr@0.2.1 r-lifecycle@1.0.4 r-httr@1.4.7 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/UchidaMizuki/jpstat
Licenses: Expat
Synopsis: Tools for Easy Use of 'e-Stat', 'RESAS' API, Etc
Description:

This package provides tools to use API such as e-Stat (<https://www.e-stat.go.jp/>), the portal site for Japanese government statistics, and RESAS (Regional Economy and Society Analyzing System, <https://resas.go.jp>).

r-jump 1.0.2
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://cran.r-project.org/package=JUMP
Licenses: GPL 3
Synopsis: Replicability Analysis of High-Throughput Experiments
Description:

Implementing a computationally scalable false discovery rate control procedure for replicability analysis based on maximum of p-values. Please cite the manuscript corresponding to this package [Lyu, P. et al., (2023), <doi:10.1093/bioinformatics/btad366>].

r-juliacall 0.17.6
Propagated dependencies: r-rjson@0.2.23 r-rcpp@1.1.0 r-knitr@1.50
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/JuliaInterop/JuliaCall
Licenses: Expat
Synopsis: Seamless Integration Between R and 'Julia'
Description:

This package provides an R interface to Julia', which is a high-level, high-performance dynamic programming language for numerical computing, see <https://julialang.org/> for more information. It provides a high-level interface as well as a low-level interface. Using the high level interface, you could call any Julia function just like any R function with automatic type conversion. Using the low level interface, you could deal with C-level SEXP directly while enjoying the convenience of using a high-level programming language like Julia'.

r-jstreer 2.6.0
Propagated dependencies: r-shinyace@0.4.4 r-shiny@1.11.1 r-rstudioapi@0.17.1 r-r-utils@2.13.0 r-miniui@0.1.2 r-jquerylib@0.1.4 r-htmlwidgets@1.6.4 r-htmltools@0.5.8.1 r-fontawesome@0.5.3 r-base64enc@0.1-3
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/stla/jsTreeR
Licenses: GPL 3
Synopsis: Wrapper of the JavaScript Library 'jsTree'
Description:

This package creates interactive trees that can be included in Shiny apps and R markdown documents. A tree allows to represent hierarchical data (e.g. the contents of a directory). Similar to the shinyTree package but offers more features and options, such as the grid extension, restricting the drag-and-drop behavior, and settings for the search functionality. It is possible to attach some data to the nodes of a tree and then to get these data in Shiny when a node is selected. Also provides a Shiny gadget allowing to manipulate one or more folders, and a Shiny module allowing to navigate in the server side file system.

r-jcolors 0.0.5
Propagated dependencies: r-scales@1.4.0 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://jaredhuling.org/jcolors/
Licenses: GPL 2
Synopsis: Colors Palettes for R and 'ggplot2', Additional Themes for 'ggplot2'
Description:

This package contains a selection of color palettes and ggplot2 themes designed by the package author.

r-jamba 1.0.4
Propagated dependencies: r-withr@3.0.2 r-rcolorbrewer@1.1-3 r-kernsmooth@2.23-26 r-colorspace@2.1-2
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://jmw86069.github.io/jamba/
Licenses: Expat
Synopsis: Just Analysis Methods Base
Description:

Just analysis methods ('jam') base functions focused on bioinformatics. Version- and gene-centric alphanumeric sort, unique name and version assignment, colorized console and HTML output, color ramp and palette manipulation, Rmarkdown cache import, styled Excel worksheet import and export, interpolated raster output from smooth scatter and image plots, list to delimited vector, efficient list tools.

r-jacobi 3.1.1
Propagated dependencies: r-rvcg@0.25 r-rgl@1.3.31 r-rcpp@1.1.0 r-carlson@3.0.0
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/stla/jacobi
Licenses: GPL 3
Synopsis: Jacobi Theta Functions and Related Functions
Description:

Evaluation of the Jacobi theta functions and related functions: Weierstrass elliptic function, Weierstrass sigma function, Weierstrass zeta function, Klein j-function, Dedekind eta function, lambda modular function, Jacobi elliptic functions, Neville theta functions, Eisenstein series, lemniscate elliptic functions, elliptic alpha function, Rogers-Ramanujan continued fractions, and Dixon elliptic functions. Complex values of the variable are supported.

r-journalabbr 0.4.3
Propagated dependencies: r-tidytable@0.11.2 r-stringr@1.6.0 r-stringi@1.8.7 r-shiny@1.11.1 r-purrr@1.2.0 r-httr@1.4.7 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://github.com/zoushucai/journalabbr
Licenses: GPL 3+
Synopsis: Journal Abbreviations for BibTeX Documents
Description:

Since the reference management software (such as Zotero', Mendeley') exports Bib file journal abbreviation is not detailed enough, the journalabbr package only abbreviates the journal field of Bib file, and then outputs a new Bib file for generating reference format with journal abbreviation on other software (such as texstudio'). The abbreviation table is from JabRef'. At the same time, Shiny application is provided to generate thebibliography', a reference format that can be directly used for latex paper writing based on Rmd files.

r-jointnmix 1.0
Channel: guix-cran
Location: guix-cran/packages/j.scm (guix-cran packages j)
Home page: https://cran.r-project.org/package=jointNmix
Licenses: GPL 2+
Synopsis: Joint N-Mixture Models for Site-Associated Species
Description:

Fits univariate and joint N-mixture models for data on two unmarked site-associated species. Includes functions to estimate latent abundances through empirical Bayes methods.

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