This package provides the TCG TSS2. The stack contains libtss2-fapi, libtss2-esys, libtss2-sys, libtss2-mu, libtss2-tcti-device, libtss2-tcti-swtpm and libtss2-tcti-mssim.

This is a system daemon implementing the TPM2 access broker (TAB) & Resource Manager (RM) spec from the TCG. The daemon (tpm2-abrmd) is implemented using Glib and the GObject system. In this documentation and in the code we use tpm2-abrmd and tabrmd interchangeably.

This package provides the TCG TSS2. The stack contains libtss2-fapi, libtss2-esys, libtss2-sys, libtss2-mu, libtss2-tcti-device, libtss2-tcti-swtpm and libtss2-tcti-mssim.

Radicle Desktop is a graphical client for radicle, a peer-to-peer code collaboration stack built on Git. It provides a local-first interface for browsing repositories, reviewing patches with inline comments, managing issues, and following an inbox of notifications across the Radicle network.

gh is GitHub on the command line. It brings pull requests, issues, and other GitHub concepts to the terminal next to where you are already working with git and your code.

Keifu is a terminal user interface tool that visualizes Git commit graphs with branch genealogy. It provides color-coded commit graphs, branch information, file change statistics, and basic Git operations.

Jira CLI is an interactive command-line tool for Atlassian Jira. It provides a TUI for working with issues, sprints, and epics, supports both Jira Cloud and on-premise installations, and offers issue creation, editing, assignment, transitions, comments, and search via JQL.

bitbucket-cli provides the bkt command for interacting with Bitbucket Cloud and Data Center from the terminal. It supports working with repositories, pull requests, pipelines, and other Bitbucket features, with OAuth and app-password authentication and secure credential storage.

GitButler is a Git client that lets you work on multiple branches at the same time. It allows you to quickly organize file changes into separate branches while still having them applied to your working directory. Features include virtual branches, easy commit management, and GitHub integration.

Git Cola is a sleek and powerful graphical user interface for Git. It lets you stage and commit changes interactively, browse history with the git-dag DAG visualizer, manage branches and remotes, resolve merge conflicts, and edit interactive rebase sequences. Git Cola is written in Python and uses Qt for its interface.

Jujutsu (jj) is a Git-compatible version control system that is both powerful and easy to use. It features automatic working copy management, operation logging for easy undo, first-class conflict handling, automatic rebasing of descendant commits, and comprehensive history rewriting tools.

Kooha is a minimalist screen recorder for GNOME. It allows you to capture your screen with a simple click, without having to configure complicated settings. It supports recording from microphones and desktop audio simultaneously, and can save recordings in WebM, MP4, GIF, and Matroska formats.

Sunshine is a self-hosted game stream host for Moonlight clients. It offers low latency cloud gaming server capabilities with support for AMD, Intel and Nvidia GPUs for hardware encoding; software encoding is also available. A web interface is provided for configuration and client pairing.

Ironbar is a customizable and feature-rich GTK4 bar for Wayland compositors. It supports CSS theming, popups, and integrations with native desktop libraries. Features include workspaces, tray icons, clock, volume control, network status, and custom widgets via Lua scripting.

Niri scrollable-tiling Wayland compositor with shared memory (SHM) fallback for PipeWire screencasting. This fixes screen sharing in browsers like Chrome that cannot handle DMA-BUF formats.

Noctalia is a desktop shell for Wayland compositors, providing bars, dock, application launcher, notifications, lock screen, wallpaper management and settings. This is the version 5 rewrite, built directly on Wayland and OpenGL ES with no Qt or GTK toolkit dependency.

noctalia-qs is a custom fork of Quickshell, the QtQuick-based desktop shell toolkit, with patches and defaults specific to the Noctalia Shell ecosystem. It adds support for the ext-background-effect-v1 Wayland protocol. The binary is named quickshell (with a qs alias) and is a drop-in replacement for upstream Quickshell when running Noctalia.

Noctalia is a minimal desktop shell for Wayland compositors, built on Quickshell (Qt/QML). It provides a status bar, panels, application launcher, notifications, lock screen, idle management, OSD, theming, wallpaper management, desktop widgets, dock, and multi-monitor support. Noctalia natively supports Niri, Hyprland, Sway, Scroll, Labwc and MangoWC. This is the v4 line, built on Quickshell; see noctalia-5 for the from-scratch C++ rewrite.

This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study.

DoRothEA is a gene regulatory network containing signed transcription factor. DoRothEA regulons, the collection of a TF and its transcriptional targets, were curated and collected from different types of evidence for both human and mouse. A confidence level was assigned to each TF-target interaction based on the number of supporting evidence.

Non-parametric method for identifying differentially expressed (up- or down- regulated) genes based on the estimated percentage of false predictions (pfp). The method can combine data sets from different origins (meta-analysis) to increase the power of the identification.

This package provides more than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.

This is a package for inference of protein activity from gene expression data. It includes the VIPER and msVIPER algorithms

This package is used for the detection of differentially expressed genes (DEGs) from the comparison of two biological conditions (treated vs. untreated, diseased vs. normal, mutant vs. wild-type) among different levels of gene expression (transcriptome ,translatome, proteome), using several statistical methods: Rank Product, Translational Efficiency, t-test, Limma, ANOTA, DESeq, edgeR. It also provides the possibility to plot the results with scatterplots, histograms, MA plots, standard deviation (SD) plots, coefficient of variation (CV) plots.