This package provides a Hoe plugin with various Markdown helpers, which can be used to e.g. hyperlink Markdown documentation between project files.

This gems add the --watch switch to the jekyll CLI interface. It allows Jekyll to rebuild your site when a file changes.

This class provides patches of some Beamer templates and commands for presentation from right to left. It requires Babel with the LuaTeX engine.

Cicero computes putative cis-regulatory maps from single-cell chromatin accessibility data. It also extends the monocle package for use in chromatin accessibility data.

This package is a collection of gene expression data from a breast cancer study published in Wang et al. 2005 and Minn et al 2007.

This package implements algorithms and data structures for performing gene expression signature (GES) searches, and subsequently interpreting the results functionally with specialized enrichment methods.

This package implements fast OpenMP parallel computing of Breiman's random forests for survival, competing risks, regression and classification based on Ishwaran and Kogalur's popular random survival forests (RSF) package. It handles missing data and now includes multivariate, unsupervised forests, quantile regression and solutions for class imbalanced data. It provides a fast interface using subsampling and confidence regions for variable importance.

This is a set of R functions that allows you to generate precise figures. This tool will create clean markdown reports about what you just discovered.

The goal of RangeArrays is to provide efficient and convenient array data structures where the columns of the arrays are generated (on the fly) by Ranges.

Number::Range is an object-oriented interface to test if a number exists in a given range, and to be able to manipulate the range.

This is an old version of revtex, and is kept as a courtesy to users having difficulty with the incompatibility of that latest version.

This library exports three symbols: with-raw-io, read-char, and read-line, to provide raw POSIX I/O in Common Lisp.

Mini-portile is a port/recipe system for Ruby developers. It provides a standard way to compile against specific versions of libraries to reproduce user environments.

Mini-portile is a port/recipe system for Ruby developers. It provides a standard way to compile against specific versions of libraries to reproduce user environments.

The package enables the user to typeset version control information provided by RCS keywords (e.g., $ID: ... $) in LaTeX documents that contain multiple TeX files.

This package contains the weights from pre-trained shallow sparsely-connected autoencoders. This data is required for getting the gene set scores with NetActivity package.

This package provides an interface to Amazon Web Services management and governance services, including CloudWatch application and infrastructure monitoring, Auto Scaling for automatically scaling resources, and more.

rifiComparative is a continuation of rifi package. It compares two conditions output of rifi using half-life and mRNA at time 0 segments. As an input for the segmentation, the difference between half-life of both condtions and log2FC of the mRNA at time 0 are used. The package provides segmentation, statistics, summary table, fragments visualization and some additional useful plots for further anaylsis.

The MassSpecWavelet package aims to process Mass Spectrometry (MS) data mainly through the use of wavelet transforms. It supports peak detection based on Continuous Wavelet Transform (CWT).

This package provides an interface to Amazon Web Services networking and content delivery services, including Route 53 Domain Name System service, CloudFront content delivery, load balancing, and more.

Access to processed 10x (droplet) and SmartSeq2 (on FACS-sorted cells) single-cell RNA-seq data from the Tabula Muris consortium (http://tabula-muris.ds.czbiohub.org/).

This package provides functions to annotate microarrays, find orthologs, and integrate heterogeneous gene expression profiles using annotation and other molecular biology information available as flat file database (plain text files).

The roundrect macros for MetaPost provide ways to produce rounded rectangles, which may or may not contain a title bar or text (the title bar may itself contain text).

emacs-wrap-region is a minor mode for Emacs that wraps a region with punctuations. For tagged markup modes, such as HTML and XML, it wraps with tags.