ReverseDiff.jl is a fast and compile-able tape-based reverse mode AD, that implements methods to take gradients, Jacobians, Hessians, and higher-order derivatives of native Julia functions (or any callable object, really).
This gem implements bcrypt_pbkdf, which is a variant of PBKDF2 (Password-Based Key Derivation Function 2) with bcrypt-based pseudorandom function. This is currently used by net-ssh to read password encrypted Ed25519 keys.
vagrant-spec is a both a specification of how Vagrant and its various components should behave as well as a library of testing helpers that let you write your own unit and acceptance tests for Vagrant.
This package provides functionality for random generation of spatial data in the spatstat family of packages. It generates random spatial patterns of points according to many simple rules (complete spatial randomness, Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns (thinning, random shift, jittering), simulated realisations of random point processes (simple sequential inhibition, Matern inhibition models, Matern cluster process, Neyman-Scott cluster processes, log-Gaussian Cox processes, product shot noise cluster processes) and simulation of Gibbs point processes (Metropolis-Hastings birth-death-shift algorithm, alternating Gibbs sampler).
This package provides a set of predicates and assertions for checking the properties of files and connections. This is mainly for use by other package developers who want to include run-time testing features in their own packages.
Add a Bioconductor themed CSS loader to your shiny app. It is based on the shinycustomloader R package. Use a spinning Bioconductor note loader to enhance your shiny app loading screen. This package is intended for developer use.
UniProt database provides a list of controlled vocabulary represented as keywords for genes or proteins. This is useful for summarizing gene functions in a compact way. This package provides data of keywords hierarchy and gene-keyword relations.
This package implements low-level utilities for single-cell trajectory analysis, primarily intended for re-use inside higher-level packages. It includes a function to create a cluster-level minimum spanning tree and data structures to hold pseudotime inference results.
This package provides tools to create a lightweight Shiny wrapper for the css-loaders created by Luke Hass https://github.com/lukehaas/css-loaders. Wrapping a Shiny output will automatically show a loader when the output is (re)calculating.
th-reify-many provides functions for recursively reifying top level declarations. The main intended use case is for enumerating the names of datatypes reachable from an initial datatype, and passing these names to some function which generates instances.
An R implementation of the correlation-based method developed in the Joshi laboratory to analyse and filter processed single-cell RNAseq data. It returns a filtered version of the data containing only genes expression values unaffected by systematic noise.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
The goal of mobilizon_reshare is to provide a suite to reshare Mobilizon events on a broad selection of platforms. This tool enables an organization to automate their social media strategy in regards to events and their promotion.
This package contains reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.
Sucker Punch is a single-process Ruby asynchronous processing library. It is perfect for asynchronous processes like emailing, data crunching or social platform manipulation; and generally recommended for jobs that are fast and non-mission critical like logs, emails, etc.
This is a package for interactive Reingold-Tilford tree diagrams created using D3.js, where every node can be expanded and collapsed by clicking on it. Tooltips and color gradients can be mapped to nodes using a numeric column in the source data frame.
Org Roam UI is meant as a successor of Org Roam server that extends functionality of Org Roam with a web application that runs side-by-side with Emacs. It provides a web interface for navigating around notes created within Org Roam.