_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
ruby-parallel-tests 4.9.0
Propagated dependencies: ruby-parallel@1.21.0
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/grosser/parallel_tests
Licenses: Expat
Synopsis: Run tests in parallel
Description:

This package can speed up Test::Unit, RSpec, Cucumber, and Spinach tests by running them concurrently across multiple CPU cores.

r-sparsematrixstats 1.20.0
Propagated dependencies: r-matrix@1.7-3 r-matrixgenerics@1.20.0 r-matrixstats@1.5.0 r-rcpp@1.0.14
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/sparseMatrixStats/
Licenses: Expat
Synopsis: Summary statistics for rows and columns of sparse matrices
Description:

This package provides high performance functions for row and column operations on sparse matrices. Currently, the optimizations are limited to data in the column sparse format.

r-arrmnormalization 1.48.0
Propagated dependencies: r-arrmdata@1.44.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/ARRmNormalization/
Licenses: Artistic License 2.0
Synopsis: Adaptive robust regression normalization for methylation data
Description:

This is a package to perform the Adaptive Robust Regression method (ARRm) for the normalization of methylation data from the Illumina Infinium HumanMethylation 450k assay.

ruby-mocha-on-bacon 0.2.3
Propagated dependencies: ruby-mocha@2.1.0
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/alloy/mocha-on-bacon
Licenses: Expat
Synopsis: Mocha adapter for Bacon
Description:

This package provides a Mocha adapter for Bacon, allowing you to use the Mocha stubbing and mocking library with Bacon, a small RSpec clone.

r-scannotatr-models 0.99.10
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://bioconductor.org/packages/scAnnotatR.models
Licenses: Expat
Synopsis: Pretrained models for scAnnotatR package
Description:

Pretrained models for scAnnotatR package. These models can be used to automatically classify several (immune) cell types in human scRNA-seq data.

r-reducedexperiment 1.2.0
Propagated dependencies: r-wgcna@1.73 r-summarizedexperiment@1.38.1 r-s4vectors@0.46.0 r-rcolorbrewer@1.1-3 r-pheatmap@1.0.12 r-patchwork@1.3.0 r-msigdbr@24.1.0 r-moments@0.14.1 r-lmertest@3.1-3 r-lme4@1.1-37 r-ica@1.0-3 r-ggplot2@3.5.2 r-clusterprofiler@4.16.0 r-car@3.1-3 r-biomart@2.64.0 r-biocparallel@1.42.0 r-biocgenerics@0.54.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://github.com/jackgisby/ReducedExperiment
Licenses: GPL 3+
Synopsis: Containers and tools for dimensionally-reduced -omics representations
Description:

This package provides SummarizedExperiment-like containers for storing and manipulating dimensionally-reduced assay data. The ReducedExperiment classes allow users to simultaneously manipulate their original dataset and their decomposed data, in addition to other method-specific outputs like feature loadings. Implements utilities and specialised classes for the application of stabilised independent component analysis (sICA) and weighted gene correlation network analysis (WGCNA).

emacs-rebecca-theme 1.3.2-0.4b8b5aa
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/vic/rebecca-theme
Licenses: Expat
Synopsis: Dark Emacs theme with purple/violet colors
Description:

Rebecca Emacs theme is a dark theme with purple/violet colors, based on the Dracula theme for Emacs and the Gloom theme for Atom.

sbcl-trivial-raw-io 0.0.2-1.b1a3c87
Dependencies: sbcl-alexandria@1.4-0.009b7e5
Channel: guix
Location: gnu/packages/lisp-xyz.scm (gnu packages lisp-xyz)
Home page: https://github.com/kingcons/trivial-raw-io
Licenses: FreeBSD
Synopsis: Trivial portability for raw *nix IO in Common Lisp
Description:

This library exports three symbols: with-raw-io, read-char, and read-line, to provide raw POSIX I/O in Common Lisp.

ruby-jekyll-seo-tag 2.7.1
Propagated dependencies: jekyll@4.4.1
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/jekyll/jekyll-seo-tag
Licenses: Expat
Synopsis: Jekyll plugin to add metadata tags for search engines and social networks
Description:

This package provides a Jekyll plugin to add metadata tags for search engines and social networks to better index and display your site's content.

r-alabaster-schemas 1.8.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/alabaster.schemas
Licenses: Expat
Synopsis: Schemas for the Alabaster framework
Description:

This package stores all schemas required by various alabaster.* packages. No computation should be performed by this package, as that is handled by alabaster.base.

r-minionsummarydata 1.38.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/minionSummaryData
Licenses: Expat
Synopsis: Summarized MinION sequencing data published by Ashton et al. 2015
Description:

This package provides summarized MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

r-doubletcollection 1.1.0-1.c0d62f1
Propagated dependencies: r-biocgenerics@0.54.0 r-doubletfinder@2.0.3-1.554097b r-gam@1.22-5 r-ggplot2@3.5.2 r-ggthemes@5.1.0 r-mast@1.33.0 r-mclust@6.1.1 r-prroc@1.4 r-reticulate@1.42.0 r-scales@1.4.0 r-scdblfinder@1.22.0 r-scds@1.24.0 r-seurat@5.3.0 r-singlecellexperiment@1.30.1 r-slingshot@2.16.0 r-summarizedexperiment@1.38.1 python@3.11.11 python-scrublet@0.2.3 python-doubletdetection@4.2
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/xnnba1984/DoubletCollection
Licenses: GPL 3+
Synopsis: Tool for finding doublets in scRNA-seq data
Description:

This is an R package that integrates the installation of doublet-detection methods. In addition, this tool is used for execution and benchmark of those eight mentioned methods.

r-chemometricswithr 0.1.13
Propagated dependencies: r-devtools@2.4.5 r-kohonen@3.0.12 r-mass@7.3-65 r-pls@2.8-5
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/rwehrens/CWR
Licenses: GPL 2+
Synopsis: Chemometrics with R
Description:

This package provides functions and scripts used in the book "Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences" by Ron Wehrens, Springer (2011).

mupen64plus-rsp-z64 2.5.9
Dependencies: mupen64plus-core@2.5.9
Channel: guix
Location: gnu/packages/emulators.scm (gnu packages emulators)
Home page: https://www.mupen64plus.org/
Licenses: GPL 2+
Synopsis: Mupen64Plus RSP Z64 plugin
Description:

Mupen64Plus is a cross-platform plugin-based Nintendo 64 (N64) emulator which is capable of accurately playing many games. This package contains the Z64 RSP processor plugin.

emacs-read-only-cfg 0.1.0-0.c128c94
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/pfchen/read-only-cfg
Licenses: GPL 3+
Synopsis: Make files read-only based on user configuration
Description:

Read-only-cfg is an Emacs minor mode that can automatically make files read-only based on user configuration. User configuration may be prefix directories or regex patterns.

mupen64plus-rsp-hle 2.5.9
Dependencies: mupen64plus-core@2.5.9
Channel: guix
Location: gnu/packages/emulators.scm (gnu packages emulators)
Home page: https://www.mupen64plus.org/
Licenses: GPL 2+
Synopsis: Mupen64Plus RSP high-level emulation (HLE) plugin
Description:

Mupen64Plus is a cross-platform plugin-based Nintendo 64 (N64) emulator which is capable of accurately playing many games. This package contains the high-level emulation (HLE) RSP processor plugin.

texlive-repeatindex 2025.2
Channel: guix
Location: gnu/packages/tex.scm (gnu packages tex)
Home page: https://ctan.org/pkg/repeatindex
Licenses: LPPL (any version)
Synopsis: Repeat items in an index after a page or column break
Description:

This package repeats item of an index if a page or column break occurs within a list of subitems. This helps to find out to which main item a subitem belongs.

r-somaticsignatures 2.44.0
Propagated dependencies: r-biobase@2.68.0 r-biostrings@2.76.0 r-genomeinfodb@1.44.0 r-genomicranges@1.60.0 r-ggbio@1.56.0 r-ggplot2@3.5.2 r-iranges@2.42.0 r-nmf@0.28 r-pcamethods@2.0.0 r-proxy@0.4-27 r-reshape2@1.4.4 r-s4vectors@0.46.0 r-variantannotation@1.54.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/juliangehring/SomaticSignatures
Licenses: Expat
Synopsis: Somatic signatures
Description:

This package identifies mutational signatures of single nucleotide variants (SNVs). It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.

retroarch-core-info 1.21.1
Channel: guix
Location: gnu/packages/emulators.scm (gnu packages emulators)
Home page: https://github.com/libretro/libretro-core-info
Licenses: Expat
Synopsis: Libretro core info files
Description:

This is a versioned snapshot of the files containing metadata about each known libretro core. The snapshot is taken from the libretro-super repository.

emacs-org-rich-yank 0.2.2
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/unhammer/org-rich-yank
Licenses: GPL 2+
Synopsis: Surround source code pasted into Org with @code{#+BEGIN_SRC} blocks
Description:

This package provides a utility function for Org buffers that makes a _SRC block with the appropriate language annotation for code that has been copied from an Emacs major mode.

emacs-expand-region 1.0.0
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/magnars/expand-region.el
Licenses: GPL 3+
Synopsis: Increase selected region by semantic units
Description:

Expand region increases the selected region by semantic units. Just keep pressing the key until it selects what you want. There's also er/contract-region if you expand too far.

r-shinycustomloader 0.9.0
Propagated dependencies: r-glue@1.8.0 r-shiny@1.10.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=shinycustomloader
Licenses: GPL 3
Synopsis: Custom loader for Shiny outputs
Description:

This package provides a custom CSS/HTML or GIF/image file for the loading screen in R Shiny. It also can use the marquee to have a custom text loading screen.

ruby-sexp-processor 4.17.0
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/seattlerb/sexp_processor
Licenses: Expat
Synopsis: ParseTree fork which includes generic S-exp processing tools
Description:

The sexp_processor package is derived from ParseTree, but contrary to ParseTree, it includes all the generic S-exp processing tools. Amongst the included tools are Sexp, SexpProcessor and Environment

r-nanostringnctools 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: https://bioconductor.org/packages/NanoStringNCTools
Licenses: Expat
Synopsis: NanoString nCounter Tools
Description:

This package provides tools for NanoString Technologies nCounter Technology. Provides support for reading RCC files into an ExpressionSet derived object. Also includes methods for QC and normalizaztion of NanoString data.

Total results: 7783