This package implements Markowitz Critical Line Algorithm ('CLA') for classical mean-variance portfolio optimization, see Markowitz (1952) <doi:10.2307/2975974>. Care has been taken for correctness in light of previous buggy implementations.

Infrastructure for task views to CRAN-style repositories: Querying task views and installing the associated packages (client-side tools), generating HTML pages and storing task view information in the repository (server-side tools).

Informal implementation of some algorithms from Graph Theory and Combinatorial Optimization which arise in the subject "Graphs and Network Optimization" from first course of the EUPLA degree of Data Engineering in Industrial Processes.

This package provides a dependency free interface to the H3 geospatial indexing system utilizing the Rust library h3o <https://github.com/HydroniumLabs/h3o> via the extendr library <https://github.com/extendr/extendr>.

Java GUI for R - cross-platform, universal and unified Graphical User Interface for R. For full functionality on Windows and Mac OS X JGR requires a start application which depends on your OS.

Facilitates the creation of intuitive figures to describe metabolomics data by utilizing Kyoto Encyclopedia of Genes and Genomes (KEGG) hierarchy data, and gathers functional orthology and gene data from the KEGG-REST API.

Validation of risk predictions obtained from survival models and competing risk models based on censored data using inverse weighting and cross-validation. Most of the pec functionality has been moved to riskRegression'.

This package performs the change-point detection in regression coefficients of linear model by partitioning the regression coefficients into two classes of smoothness. The change-point and the regression coefficients are jointly estimated.

Normalization based a subset of negative control probes as described in Subset quantile normalization using negative control features'. Wu Z, Aryee MJ, J Comput Biol. 2010 Oct;17(10):1385-95 [PMID 20976876].

This package provides a wrapper around a CSS library called vov.css', intended for use in shiny applications. Simply wrap a UI element in one of the animation functions to see it move.

Advanced response surface analysis. The main function RSA computes and compares several nested polynomial regression models (full second- or third-order polynomial, shifted and rotated squared difference model, rising ridge surfaces, basic squared difference model, asymmetric or level-dependent congruence effect models). The package provides plotting functions for 3d wireframe surfaces, interactive 3d plots, and contour plots. Calculates many surface parameters (a1 to a5, principal axes, stationary point, eigenvalues) and provides standard, robust, or bootstrapped standard errors and confidence intervals for them.

This package provides functions for fitting and working with generalized additive models, as described in chapter 7 of "Statistical Models in S" (Chambers and Hastie (eds), 1991), and "Generalized Additive Models" (Hastie and Tibshirani, 1990).

This package provides a range of tools for social network analysis, including node and graph-level indices, structural distance and covariance methods, structural equivalence detection, network regression, random graph generation, and 2D/3D network visualization.

This package performs several conventional cross-validation statistical methods for climate-growth model in the climate reconstruction from tree rings, including Sign Test statistic, Reduction of Error statistic, Product Mean Test, Durbin-Watson statistic etc.

This package provides a collection of lightweight functions that can be used to determine the computing environment in which your code is running. This includes operating systems, continuous integration (CI) environments, containers, and more.

The efficient Markov chain Monte Carlo estimation of stochastic volatility models with and without leverage (asymmetric and symmetric stochastic volatility models). Further, it computes the logarithm of the likelihood given parameters using particle filters.

This package provides functions for assigning Clarke or Parkes (Consensus) error grid zones to blood glucose values, and for plotting both types of error grids in both mg/mL and mmol/L units.

Work with Ecological Metadata Language ('EML') files. EML is a widely used metadata standard in the ecological and environmental sciences, described in Jones et al. (2006), <doi:10.1146/annurev.ecolsys.37.091305.110031>.

An implementation of the ESS algorithm following Amol Deshpande, Minos Garofalakis, Michael I Jordan (2013) <doi:10.48550/arXiv.1301.2267>. The ESS algorithm is used for model selection in decomposable graphical models.

This package provides a multivariate copula-based dependence measure. For more information, see Griessenberger, Junker, Trutschnig (2022), On a multivariate copula-based dependence measure and its estimation, Electronic Journal of Statistics, 16, 2206-2251.

Programmatically access the Quickbase JSON API <https://developer.quickbase.com>. You supply parameters for an API call, qbr delivers an http request to the API endpoint and returns its response. Outputs follow tidyverse philosophy.

Density, distribution function, quantile function and random generation for the skewed generalized t distribution. This package also provides a function that can fit data to the skewed generalized t distribution using maximum likelihood estimation.

Connect to a remote server over SSH to transfer files via SCP, setup a secure tunnel, or run a command or script on the host while streaming stdout and stderr directly to the client.

This package provides efficient implementation of the Wild Binary Segmentation and Binary Segmentation algorithms for estimation of the number and locations of multiple change-points in the piecewise constant function plus Gaussian noise model.