_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
python-jwst-reffiles 1.0.1
Propagated dependencies: python-astropy@7.1.0 python-jwst@1.19.2 python-matplotlib@3.8.2 python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix
Location: gnu/packages/astronomy.scm (gnu packages astronomy)
Home page: https://github.com/spacetelescope/jwst_reffiles
Licenses: Modified BSD
Synopsis: Tool for JWST's CRDS-formatted reference files creation
Description:

This package provides a tool to create Calibration References Data System-formatted reference files for James Webb Space Telescope from a set of input dark current files and a set of flat field files.

u-boot-rpi-4-32b-bin 2025.01
Dependencies: u-boot-rpi-4-32b@2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a 32-bit build of U-Boot.

This package only contains the file u-boot.bin.

u-boot-rpi-3-32b-bin 2025.01
Dependencies: u-boot-rpi-3-32b@2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a 32-bit build of U-Boot.

This package only contains the file u-boot.bin.

r-microbiomeprofiler 1.16.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/YuLab-SMU/MicrobiomeProfiler/
Licenses: GPL 2
Synopsis: An R/shiny package for microbiome functional enrichment analysis
Description:

This is an R/shiny package to perform functional enrichment analysis for microbiome data. This package was based on clusterProfiler. Moreover, MicrobiomeProfiler support KEGG enrichment analysis, COG enrichment analysis, Microbe-Disease association enrichment analysis, Metabo-Pathway analysis.

julia-referencetests 0.9.7
Propagated dependencies: julia-deepdiffs@1.2.0 julia-distances@0.10.7 julia-fileio@1.9.1 julia-imagecore@0.9.4 julia-imageinterminal@0.4.7
Channel: guix
Location: gnu/packages/julia-xyz.scm (gnu packages julia-xyz)
Home page: https://juliatesting.github.io/ReferenceTests.jl/latest/
Licenses: Expat
Synopsis: Utility package for comparing data against reference files
Description:

ReferenceTests.jl is a Julia package that adds a couple of additional macros to your testing toolbox. In particular, it focuses on functionality for testing values against reference files, which in turn the package can help create and update if need be.

java-marlin-renderer 0.9.4.8
Dependencies: java-hamcrest-core@1.3 java-junit@4.12
Channel: guix
Location: gnu/packages/java-graphics.scm (gnu packages java-graphics)
Home page: https://github.com/bourgesl/marlin-renderer/
Licenses: GPL 2
Synopsis: Rendering engine
Description:

Marlin is a Java2D RenderingEngine optimized for performance (improved memory usage and footprint, better multi-threading) and better visual quality based on OpenJDK's pisces implementation. It handles shape rendering (Graphics2D draw(Shape) / fill(Shape) with stroke and dash attributes.

r-microbiomedatasets 1.18.0
Propagated dependencies: r-treesummarizedexperiment@2.16.1 r-summarizedexperiment@1.38.1 r-multiassayexperiment@1.34.0 r-experimenthub@2.16.0 r-biostrings@2.76.0 r-biocgenerics@0.54.0 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/microbiomeDataSets
Licenses: CC0
Synopsis: Experiment Hub based microbiome datasets
Description:

microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.

u-boot-rpi-arm64-bin 2025.01
Dependencies: u-boot-rpi-arm64@2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a common 64-bit build of U-Boot for all 64-bit capable Raspberry Pi variants.

This package only contains the file u-boot.bin.

emacs-rainbow-blocks 1.0.0-1.dd435d7
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/istib/rainbow-blocks
Licenses: GPL 3+
Synopsis: Highlight sexp blocks
Description:

Rainbow-blocks is an Emacs mode that highlights blocks made of parentheses, brackets, and braces according to their depth. Each successive level is highlighted in a different color. This makes it easy to orient yourself in the code, and tell which statements are at a given level.

java-rsyntaxtextarea 3.4.0
Channel: guix
Location: gnu/packages/textutils.scm (gnu packages textutils)
Home page: https://bobbylight.github.io/RSyntaxTextArea/
Licenses: Modified BSD
Synopsis: Syntax highlighting text component for Java Swing
Description:

RSyntaxTextArea is a syntax highlighting, code folding text component for Java Swing. It extends JTextComponent so it integrates completely with the standard javax.swing.text package. It is fast and efficient, and can be used in any application that needs to edit or view source code.

ruby-prawn-templates 0.1.2
Propagated dependencies: ruby-pdf-reader@2.4.0 ruby-prawn@2.4.0
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/prawnpdf/prawn-templates
Licenses: Ruby License GPL 2+ GPL 3+
Synopsis: Prawn extension to include or combine PDF documents
Description:

This unmaintained package provides a Prawn extension that allows including other Portable Document Format (PDF) documents as background or combining several PDF documents into one. This functionality used to be part of Prawn itself, but was extracted from Prawn 0.15.0 because of its many longstanding issues.

r-affyrnadegradation 1.54.0
Propagated dependencies: r-affy@1.86.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/AffyRNADegradation
Licenses: GPL 2+
Synopsis: Analyze and correct probe positional bias in data due to RNA degradation
Description:

The AffyRNADegradation package helps with the assessment and correction of RNA degradation effects in Affymetrix 3 expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

ruby-atoulme-saikuro 1.2.1
Propagated dependencies: ruby-irb@1.1.1 ruby-e2mmap@0.1.0
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: http://www.github.com/atoulme/Saikuro
Licenses: Modified BSD
Synopsis: Cyclomatic complexity analyzer
Description:

Saikuro is a Ruby cyclomatic complexity analyzer. When given Ruby source code Saikuro will generate a report listing the cyclomatic complexity of each method found. In addition, Saikuro counts the number of lines per method and can generate a listing of the number of tokens on each line of code.

r-weberdivechalcdata 1.12.0
Propagated dependencies: r-spatialexperiment@1.18.1 r-singlecellexperiment@1.30.1 r-experimenthub@2.16.0
Channel: guix-bioc
Location: guix-bioc/packages/w.scm (guix-bioc packages w)
Home page: https://github.com/lmweber/WeberDivechaLCdata
Licenses: Expat
Synopsis: Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples
Description:

Spatially-resolved transcriptomics (SRT) and single-nucleus RNA-sequencing (snRNA-seq) data from the locus coeruleus (LC) in postmortem human brain samples. Data were generated with the 10x Genomics Visium SRT and 10x Genomics Chromium snRNA-seq platforms. Datasets are stored in SpatialExperiment and SingleCellExperiment formats.

perl-regexp-grammars 1.058
Channel: guix
Location: gnu/packages/perl.scm (gnu packages perl)
Home page: https://metacpan.org/release/Regexp-Grammars
Licenses: GPL 1+
Synopsis: Complete recursive descent parser on Perl's regex engine
Description:

The Regexp::Grammars module adds a small number of new regex constructs that can be used within Perl 5.10 patterns to implement complete recursive-descent parsing. It allows you to go beyond matching complex, nested and recursive structures, and allows you to parse and extract hierarchical data from it.

python-graphql-relay 3.1.0
Propagated dependencies: python-graphql-core@3.1.2
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/graphql-python/graphql-relay-py
Licenses: Expat
Synopsis: Relay implementation for Python
Description:

This is a library to allow the easy creation of Relay-compliant servers using the GraphQL Python reference implementation of a GraphQL server. It should be noted that the code is a exact port of the original graphql-relay js implementation from Facebook.

ruby-mime-types-data 3.2016.0521
Channel: guix
Location: gnu/packages/ruby-check.scm (gnu packages ruby-check)
Home page: https://github.com/mime-types/mime-types-data/
Licenses: Expat
Synopsis: Registry for information about MIME media type definitions
Description:

mime-types-data provides a registry for information about Multipurpose Internet Mail Extensions (MIME) media type definitions. It can be used with the Ruby mime-types library or other software to determine defined filename extensions for MIME types, or to use filename extensions to look up the likely MIME type definitions.

python-scikit-rebate 0.62
Propagated dependencies: python-numpy@1.26.4 python-scipy@1.12.0 python-scikit-learn@1.7.0 python-joblib@1.5.1
Channel: guix
Location: gnu/packages/machine-learning.scm (gnu packages machine-learning)
Home page: https://epistasislab.github.io/scikit-rebate/
Licenses: Expat
Synopsis: Relief-based feature selection algorithms for Python
Description:

Scikit-rebate is a scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning. These algorithms excel at identifying features that are predictive of the outcome in supervised learning problems, and are especially good at identifying feature interactions that are normally overlooked by standard feature selection algorithms.

pam-dumb-runtime-dir 1.0.4
Dependencies: linux-pam@1.5.2
Channel: rosenthal
Location: rosenthal/packages/admin.scm (rosenthal packages admin)
Home page: https://github.com/ifreund/dumb_runtime_dir
Licenses: Zero-Clause BSD
Synopsis: Create @code{XDG_RUNTIME_DIR} on login and never remove it
Description:

This package creates an XDG_RUNTIME_DIR directory on login per the freedesktop.org base directory spec. Flaunts the spec and never removes it, even after last logout. This keeps things simple and predictable.

The user is responsible for ensuring that the /run/user directory exists and is only writable by root.

texlive-returntogrid 2025.2
Channel: guix
Location: gnu/packages/tex.scm (gnu packages tex)
Home page: https://ctan.org/pkg/returntogrid
Licenses: LPPL 1.3c
Synopsis: Semi-automatic grid typesetting
Description:

returntogrid offers a few commands to get something like an simple, semi-automatic grid typesetting. It does more or less what the existing gridset package does. The main differences to gridset are that returntogrid works also with LuaLaTeX and that it has also a command to do some horizontal movements to get to Tab positions.

r-microbiomeexplorer 1.20.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/microbiomeExplorer
Licenses: Expat
Synopsis: Microbiome Exploration App
Description:

The MicrobiomeExplorer R package is designed to facilitate the analysis and visualization of marker-gene survey feature data. It allows a user to perform and visualize typical microbiome analytical workflows either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows the application enables automated analysis report generation.

u-boot-rpi-4-32b-efi 2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

It allows network booting and uses the device-tree from the firmware, allowing the usage of overlays. It can act as an EFI firmware for the grub-efi-netboot-removable-bootloader. This is a 32-bit build of U-Boot.

u-boot-rpi-3-32b-efi 2025.01
Channel: guix
Location: gnu/packages/bootloaders.scm (gnu packages bootloaders)
Home page: https://www.denx.de/wiki/U-Boot/
Licenses: GPL 2+
Synopsis: ARM bootloader
Description:

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

It allows network booting and uses the device-tree from the firmware, allowing the usage of overlays. It can act as an EFI firmware for the grub-efi-netboot-removable-bootloader. This is a 32-bit build of U-Boot.

emacs-visual-replace 1.2-1.17d693f
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/szermatt/visual-replace
Licenses: GPL 3+
Synopsis: Alternate interface for @code{replace-string} and @code{query-replace}
Description:

visual-replace provides an alternate interface for search and replacement commands that supports previews. The interface also allows one to edit both the query-text and its replacement in the same minibuffer prompt. The interface covers the following commands:

  1. replace-string

  2. replace-regexp

  3. query-replace

  4. query-replace-regexp

Total results: 7783