AnnotationHub package containing datasets for use in the TENET package. Includes GenomicRanges objects representing putative enhancer, promoter, and open chromatin regions. All included datasets are aligned to the hg38 human genome.

Package cors is net/http handler to handle Cross-origin resource sharing related requests as defined by http://www.w3.org/TR/cors/.

The package provides support for use of Babel in documents written in Russian (in both traditional and modern forms). The support is adapted for use both under traditional TeX engines, and under XeTeX and LuaTeX.

This package provides a drop-in replacement for requests.Session with caching offload to SQLite, Redis, MongoDB and AWS DynamoDB or save responses as planin JSON/YAML file or save responses as plain JSON/YAML files.

This package provides a set of predicates and assertions for checking the properties of dates and times. This is mainly for use by other package developers who want to include run-time testing features in their own packages.

The package provides a comprehensive mapping table of nine different Metabolite ID formats and their common name. The data has been collected and merged from four publicly available source, including HMDB, Comptox Dashboard, ChEBI, and the graphite Bioconductor R package.

ExperimentHub package containing datasets for use in the TENET package's vignette and function examples. These include a variety of different objects to illustrate different datasets used in TENET functions. Where applicable, all datasets are aligned to the hg38 human genome.

In short, a TeX-style shebang (%#!) is a special kind of TeX comment that you include in your TeX or LaTeX document file to tell the operating system's shell how to run the file for the rest of the file: %#!lualatex foo.tex.

Org Roam BibTeX is a library which offers a tighter integration between Org Roam, Helm-BibTeX, and Org Ref. It allows users to access their bibliographical notes in Org Roam directory via Helm BibTeX, Ivy BibTeX, or by opening Org Ref's cite: links.

This tool generates Lisp images that can embed the provided systems and make for REPLs that start blazing fast.

• It’s portable and should work with any compiler.

• It works for any REPL.

• It allows you to include arbitrary libraries.

Read in imaging-based spatial transcriptomics technology data. Current available modules are for Xenium by 10X Genomics, CosMx by Nanostring, MERSCOPE by Vizgen, or STARmapPLUS from Broad Institute. You can choose to read the data in as a SpatialExperiment or a SingleCellExperiment object.

This library enables path variables in networking routes when using Hunchenissr for Common Lisp. If a part of the path (between two slashes) starts with a question mark (?), that symbol (without question mark) will be bound to whatever value was in the same place in the URL (as a string).

Catalyst is a modern framework for making web applications. It is designed to make it easy to manage the various tasks you need to do to run an application on the web, either by doing them itself, or by letting you "plug in" existing Perl modules that do what you need.

Flask-RESTX is an extension for Flask that adds support for quickly building REST APIs. Flask-RESTX encourages best practices with minimal setup. If you are familiar with Flask, Flask-RESTX should be easy to pick up. It provides a coherent collection of decorators and tools to describe your API and expose its documentation properly using Swagger.

multipart-parser is a simple parser for multipart MIME messages, written in Ruby, based on felixge/node-formidable's parser. It has the following characteristics:

• Pure Ruby

• Event-driven API

• Only supports one level of multipart parsing

• Does not perform I/O

• Does not depend on any other library.

John the Ripper is a fast password cracker. Its primary purpose is to detect weak Unix passwords. Besides several crypt password hash types most commonly found on various Unix systems, supported out of the box are Windows LM hashes, plus lots of other hashes and ciphers. This is the community-enhanced, "jumbo" version of John the Ripper.

Provides a set of udev rules to allow using Mooltipass devices into a compatible udev Linux box. This package is intended to be added as a rule to the udev-service-type in your operating-system configuration.

Simply installing this package will not have any effect. It is meant to be passed to the udev service.

Provides a set of udev rules to allow using Mooltipass devices into a compatible udev Linux box. This package is intended to be added as a rule to the udev-service-type in your operating-system configuration.

Simply installing this package will not have any effect. It is meant to be passed to the udev service.

Crypt::RandPasswd provides three functions that can be used to generate random passwords, constructed from words, letters, or characters. This code is a Perl implementation of the Automated Password Generator standard, like the program described in "A Random Word Generator For Pronounceable Passwords". This code is a re-engineering of the program contained in Appendix A of FIPS Publication 181, "Standard for Automated Password Generator".

This package was factored out of Plots.jl to allow any other plotting package to use the recipe pipeline. In short, the extremely lightweight RecipesBase.jl package can be depended on by any package to define "recipes": plot specifications of user-defined types, as well as custom plot types. RecipePipeline.jl contains the machinery to translate these recipes to full specifications for a plot.

This package provides LaTeX macros to easily and concisely typeset vectors and matrices in a flexible way such as to follow the RIGID notation convention. The package enables the user to define custom commands that can then be used in any math-mode environment to efficiently and rigorously typeset the notational elements commonly used in robotics research (and many other fields) for position vectors, rotation matrices, pose matrices, etc.

The strict_rfc3339 Python module provides strict, simple, lightweight RFC3339 procedures. It enables or aims to:

• Convert UNIX timestamps to and from RFC3339.

• Produce RFC3339 strings with a UTC offset (Z) or with the offset that the C time module reports is the local timezone offset.

• Be simple with minimal dependencies/libraries.

• Avoid timezones as much as possible.

• Be very strict and follow RFC3339.

Gene signatures of TB progression, TB disease, and other TB disease states have been validated and published previously. This package aggregates known signatures and provides computational tools to enlist their usage on other datasets. The TBSignatureProfiler makes it easy to profile RNA-Seq data using these signatures and includes common signature profiling tools including ASSIGN, GSVA, and ssGSEA. Original models for some gene signatures are also available. A shiny app provides some functionality alongside for detailed command line accessibility.

This gem removes common margin from indented strings, such as the ones produced by indented heredocs. In other words, it strips out leading whitespace chars at the beginning of each line, but only as much as the line with the smallest margin.

It is acknowledged that many strings defined by heredocs are just code and fact is that most parsers are insensitive to indentation. If, however, the strings are to be used otherwise, be it for printing or testing, the extra indentation will probably be an issue and hence this gem.