This package provides tools to analyze binary graph objects.

Calculate robust measures of effect sizes using the bootstrap.

Construction and analysis of matrix population models in R.

Analyze and model heteroskedastic behavior in financial time series.

Non-spatial and spatial open-population capture-recapture analysis.

Plot principal component histograms around a bivariate scatter plot.

Plots that illustrate the flow of information or material.

LIGER is a package for integrating and analyzing multiple single-cell datasets, developed and maintained by the Macosko lab. It relies on integrative non-negative matrix factorization to identify shared and dataset-specific factors.

Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) running locally to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.

This package provides a toolkit for the analysis of paths from spatial tracking experiments and calculation of goal-finding strategies. This package is centered on an approach using machine learning for path classification.

Peaks Over Threshold (POT) or methode du renouvellement'. The distribution for the excesses can be chosen, and heterogeneous data (including historical data or block data) can be used in a Maximum-Likelihood framework.

This package performs optimization in R using C++. A unified wrapper interface is provided to call C functions of the five optimization algorithms (Nelder-Mead, BFGS, CG, L-BFGS-B and SANN) underlying optim().

This package provides a toolkit of functions for nonlinear regression and repeated measurements. It was designated to be imported by other packages such as gnlm, stable, growth, repeated, and event.

Allows easy access to the LEMON Graph Library set of algorithms, written in C++. See the LEMON project page at <https://lemon.cs.elte.hu/trac/lemon>. Current LEMON version is 1.3.1.

Wrapper for Datamuse API to find rhyming and other associated words. This includes words of similar meaning, spelling, or other related words. Learn more about the Datamuse API here <https://www.datamuse.com/api/>.

This is a package for biclustering analysis and exploration of results.

This R package provides additional capabilities and speed for GenomicRanges operations.

This package allows users to test characteristics of common R objects.

This package can be used to compute local false discovery rates.

This package provides a collection of miscellaneous 3d plots, including isosurfaces.

This package provides a fast and scalable test runner for Ruby.

This package provides a rofi frontend for the buku bookmark manager.

Predicts the sex of samples in gene expression microarray datasets.

Set of functions for the easy analyses of conditioning data.