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r-npsurv 0.5-0
Propagated dependencies: r-lsei@1.3-0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://www.stat.auckland.ac.nz/~yongwang
Licenses: GPL 2+
Build system: r
Synopsis: Nonparametric survival analysis
Description:

This package contains functions for non-parametric survival analysis of exact and interval-censored observations.

r-shades 1.4.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/jonclayden/shades
Licenses: Modified BSD
Build system: r
Synopsis: Simple color manipulation
Description:

This package provides functions for easily manipulating colors, creating color scales and calculating color distances.

r-degseq 1.64.0
Propagated dependencies: r-qvalue@2.42.0
Channel: guix-bioc
Location: guix-bioc/packages/d.scm (guix-bioc packages d)
Home page: https://bioconductor.org/packages/DEGseq
Licenses: FSDG-compatible
Build system: r
Synopsis: Identify Differentially Expressed Genes from RNA-seq data
Description:

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

r-icheck 1.40.0
Propagated dependencies: r-scatterplot3d@0.3-44 r-rgl@1.3.31 r-randomforest@4.7-1.2 r-preprocesscore@1.72.0 r-mass@7.3-65 r-lumi@2.62.0 r-lmtest@0.9-40 r-limma@3.66.0 r-gplots@3.2.0 r-geneselectmmd@2.54.0 r-biobase@2.70.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/iCheck
Licenses: GPL 2+
Build system: r
Synopsis: QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
Description:

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

r-subseq 1.40.0
Propagated dependencies: r-tidyr@1.3.1 r-qvalue@2.42.0 r-magrittr@2.0.4 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-digest@0.6.39 r-data-table@1.17.8 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: http://github.com/StoreyLab/subSeq
Licenses: Expat
Build system: r
Synopsis: Subsampling of high-throughput sequencing count data
Description:

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

r-sctgif 1.24.0
Propagated dependencies: r-tibble@3.3.0 r-tagcloud@0.7.0 r-summarizedexperiment@1.40.0 r-singlecellexperiment@1.32.0 r-schex@1.24.0 r-scales@1.4.0 r-s4vectors@0.48.0 r-rmarkdown@2.30 r-rcpp@1.1.0 r-rcolorbrewer@1.1-3 r-plotly@4.11.0 r-nntensor@1.3.0 r-msigdbr@25.1.1 r-knitr@1.50 r-igraph@2.2.1 r-gseabase@1.72.0 r-ggplot2@4.0.1 r-biocstyle@2.38.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/s.scm (guix-bioc packages s)
Home page: https://bioconductor.org/packages/scTGIF
Licenses: Artistic License 2.0
Build system: r
Synopsis: Cell type annotation for unannotated single-cell RNA-Seq data
Description:

scTGIF connects the cells and the related gene functions without cell type label.

r-vtpnet 0.50.0
Propagated dependencies: r-gwascat@2.42.0 r-graph@1.88.0 r-genomicranges@1.62.0 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-bioc
Location: guix-bioc/packages/v.scm (guix-bioc packages v)
Home page: https://bioconductor.org/packages/vtpnet
Licenses: Artistic License 2.0
Build system: r
Synopsis: variant-transcription factor-phenotype networks
Description:

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828.

r-cmapss 0.1.1
Propagated dependencies: r-rdpack@2.6.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=CMAPSS
Licenses: GPL 3
Build system: r
Synopsis: Commercial Modular Aero-Propulsion System Simulation Data Set
Description:

This package contains the Commercial Modular Aero-Propulsion System Simulation (C-MAPSS) data set.

r-corona 0.3.0
Propagated dependencies: r-reshape2@1.4.5 r-qicharts2@0.8.1 r-plyr@1.8.9 r-gridextra@2.3 r-ggplot2@4.0.1 r-gganimate@1.0.11
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=corona
Licenses: GPL 3
Build system: r
Synopsis: Coronavirus ('Rona') Data Exploration
Description:

Manipulate and view coronavirus data and other societally relevant data at a basic level.

r-epxtor 0.4-1
Propagated dependencies: r-xml@3.99-0.20 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://cran.r-project.org/package=epxToR
Licenses: GPL 3
Build system: r
Synopsis: Import 'Epidata' XML Files '.epx'
Description:

Import data from Epidata XML files .epx and convert it to R data structures.

r-forams 2.0-6
Propagated dependencies: r-vegan@2.7-2
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://cran.r-project.org/package=forams
Licenses: GPL 2+
Build system: r
Synopsis: Foraminifera and Community Ecology Analyses
Description:

SHE, FORAM Index and ABC Method analyses and custom plot functions for community data.

r-lmmpar 0.1.0
Propagated dependencies: r-plyr@1.8.9 r-mnormt@2.1.1 r-matrixcalc@1.0-6 r-mass@7.3-65 r-doparallel@1.0.17 r-bigmemory@4.6.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/fulyagokalp/lmmpar
Licenses: Expat
Build system: r
Synopsis: Parallel Linear Mixed Model
Description:

Embarrassingly Parallel Linear Mixed Model calculations spread across local cores which repeat until convergence.

r-lincal 1.0.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LinCal
Licenses: GPL 2
Build system: r
Synopsis: Static Univariate Frequentist and Bayesian Linear Calibration
Description:

Estimate and confidence/credible intervals for an unknown regressor x0 given an observed y0.

r-nephro 1.5
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://cran.r-project.org/package=nephro
Licenses: GPL 3+
Build system: r
Synopsis: Utilities for Nephrology
Description:

Set of functions to estimate kidney function and other traits of interest in nephrology.

r-qvcalc 1.0.4
Channel: guix-cran
Location: guix-cran/packages/q.scm (guix-cran packages q)
Home page: https://davidfirth.github.io/qvcalc/
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Quasi Variances for Factor Effects in Statistical Models
Description:

This package provides functions to compute quasi variances and associated measures of approximation error.

r-svhttp 1.0.5
Propagated dependencies: r-svmisc@1.4.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/SciViews/svHttp
Licenses: GPL 2
Build system: r
Synopsis: 'SciViews::R' - HTTP Server
Description:

This package provides a simple HTTP server allows to connect GUI clients to R.

r-versus 0.3.1
Propagated dependencies: r-vctrs@0.6.5 r-tidyselect@1.2.1 r-tibble@3.3.0 r-rlang@1.1.6 r-purrr@1.2.0 r-pillar@1.11.1 r-glue@1.8.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-collapse@2.1.5 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/v.scm (guix-cran packages v)
Home page: https://eutwt.github.io/versus/
Licenses: Expat
Build system: r
Synopsis: Compare Data Frames
Description:

This package provides a toolset for interactively exploring the differences between two data frames.

r-rdisop 1.70.0
Propagated dependencies: r-rcpp@1.1.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/sneumann/Rdisop
Licenses: GPL 2
Build system: r
Synopsis: Decomposition of isotopic patterns
Description:

This is a package for identification of metabolites using high precision mass spectrometry. MS peaks are used to derive a ranked list of sum formulae, alternatively for a given sum formula the theoretical isotope distribution can be calculated to search in MS peak lists.

r-qte-rd 1.2.0
Propagated dependencies: r-quantreg@6.1 r-plotrix@3.8-13
Channel: guix-cran
Location: guix-cran/packages/q.scm (guix-cran packages q)
Home page: https://cran.r-project.org/package=QTE.RD
Licenses: GPL 3+
Build system: r
Synopsis: Quantile Treatment Effects under the Regression Discontinuity Design
Description:

This package provides comprehensive methods for testing, estimating, and conducting uniform inference on quantile treatment effects (QTEs) in sharp regression discontinuity (RD) designs, incorporating covariates and implementing robust bias correction methods of Qu, Yoon, Perron (2024) <doi:10.1162/rest_a_01168>.

r-rdota2 0.1.6
Propagated dependencies: r-jsonlite@2.0.0 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/LyzandeR/RDota2
Licenses: Expat
Build system: r
Synopsis: An R Steam API Client for Valve's Dota2
Description:

An R API Client for Valve's Dota2. RDota2 can be easily used to connect to the Steam API and retrieve data for Valve's popular video game Dota2. You can find out more about Dota2 at <http://store.steampowered.com/app/570/>.

r-rkelly 1.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RKelly
Licenses: Expat
Build system: r
Synopsis: Translate Odds and Probabilities
Description:

Calculates the Kelly criterion (Kelly, J.L. (1956) <doi:10.1002/j.1538-7305.1956.tb03809.x>) for bets given quoted prices, model predictions and commissions. Additionally it contains helper functions to calculate the probabilities for wins and draws in multi-leg games.

r-rrblup 4.6.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: <https://potatobreeding.cals.wisc.edu/software/>
Licenses: GPL 3
Build system: r
Synopsis: Ridge Regression and Other Kernels for Genomic Selection
Description:

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

r-rearrr 0.3.5
Propagated dependencies: r-checkmate@2.3.3 r-dplyr@1.1.4 r-lifecycle@1.0.4 r-plyr@1.8.9 r-purrr@1.2.0 r-r6@2.6.1 r-rlang@1.1.6 r-tibble@3.3.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/ludvigolsen/rearrr
Licenses: Expat
Build system: r
Synopsis: Rearranging data by a set of methods
Description:

This package arranges data by a set of methods. It uses rearrangers to reorder data points and mutators to change their values. From basic utilities, to centering the greatest value, to swirling in 3-dimensional space, rearrr enables creativity when plotting and experimenting with data.

r-rnifti 1.8.0
Dependencies: zlib@1.3.1
Propagated dependencies: r-rcpp@1.1.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/jonclayden/RNifti
Licenses: GPL 2
Build system: r
Synopsis: Fast R and C++ access to NIfTI images
Description:

This package provides very fast read and write access to images stored in the NIfTI-1 and ANALYZE-7.5 formats, with seamless synchronisation between compiled C and interpreted R code. It also provides a C/C++ API that can be used by other packages.

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