This package contains core functions to process and analyze drug response data. The package provides tools for normalizing, averaging, and calculation of gDR
metrics data. All core functions are wrapped into the pipeline function allowing analyzing the data in a straightforward way.
The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS.
GdkPixbuf is a library that loads image data in various formats and stores it as linear buffers in memory. The buffers can then be scaled, composited, modified, saved, or rendered.
Package fills a helper package role for whole gDR
suite. It helps to support good development practices by keeping style requirements and style tests for other packages. It also contains build helpers to make all package requirements met.
CL-GD is a library for Common Lisp which provides an interface to the GD Graphics Library for the dynamic creation of images. It is based on UFFI and should thus be portable to all CL implementations supported by UFFI.
This package contains utility functions used throughout the gDR
platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR
platform. Many of the functions are utilized by the gDRcore
package.
This package provides tools for simulating from spatial modeling of individual level of infectious disease transmission when co-variates measured with error, and carrying out infectious disease data analyses with the same models. The epidemic models considered are distance-based model within Susceptible-Infectious-Removed (SIR) compartmental frameworks.
GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed.
Many tools for Geometric Data Analysis (Le Roux & Rouanet (2005) <doi:10.1007/1-4020-2236-0>), such as MCA variants (Specific Multiple Correspondence Analysis, Class Specific Analysis), many graphical and statistical aids to interpretation (structuring factors, concentration ellipses, inductive tests, bootstrap validation, etc.) and multiple-table analysis (Multiple Factor Analysis, between- and inter-class analysis, Principal Component Analysis and Correspondence Analysis with Instrumental Variables, etc.).
This library provides docking features for gtk+.
Model and estimate the model parameters for the spatial model of individual-level infectious disease transmission in Susceptible-Infected-Recovered (SIR) framework.
The package is a part of the gDR
suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.
GDB is the GNU debugger. With it, you can monitor what a program is doing while it runs or what it was doing just before a crash. It allows you to specify the runtime conditions, to define breakpoints, and to change how the program is running to try to fix bugs. It can be used to debug programs written in C, C++, Ada, Objective-C, Pascal and more.
GDB is the GNU debugger. With it, you can monitor what a program is doing while it runs or what it was doing just before a crash. It allows you to specify the runtime conditions, to define breakpoints, and to change how the program is running to try to fix bugs. It can be used to debug programs written in C, C++, Ada, Objective-C, Pascal and more.
This package provides classes and functions to calculate various distance measures and routes in heterogeneous geographic spaces represented as grids. The package implements measures to model dispersal histories first presented by van Etten and Hijmans (2010) <doi:10.1371/journal.pone.0012060>. Least-cost distances as well as more complex distances based on (constrained) random walks can be calculated. The distances implemented in the package are used in geographical genetics, accessibility indicators, and may also have applications in other fields of geospatial analysis.
Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users define cubes by spatiotemporal extent, resolution, and spatial reference system and let gdalcubes automatically apply cropping, reprojection, and resampling using the Geospatial Data Abstraction Library ('GDAL'). Implemented functions on data cubes include reduction over space and time, applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values, exporting data cubes as netCDF
or GeoTIFF
files, plotting, and extraction from spatial and or spatiotemporal features. All computational parts are implemented in C++, linking to the GDAL', netCDF
', CURL', and SQLite libraries. See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
This package provides FFI bindings to libgdk-3.
This package provides FFI bindings to libgdk-3.
This package provides FFI bindings to libgdk-3.
This package provides FFI bindings to libgdk-3.
The GDELT V1 Event data set is over 41 GB now and growing 250 MB a month. The number of source articles has increased over time and unevenly across countries. This package makes it easy to download a subset of that data, then normalize that data to facilitate valid time series analysis.
Interface to the Raster API of the Geospatial Data Abstraction Library ('GDAL', <https://gdal.org>). Bindings are implemented in an exposed C++ class encapsulating a GDALDataset and its raster band objects, along with several stand-alone functions. These support manual creation of uninitialized datasets, creation from existing raster as template, read/set dataset parameters, low level I/O, color tables, raster attribute tables, virtual raster (VRT), and gdalwarp wrapper for reprojection and mosaicing. Includes GDAL algorithms ('dem_proc()
', polygonize()
', rasterize()
', etc.), and functions for coordinate transformation and spatial reference systems. Calling signatures resemble the native C, C++ and Python APIs provided by the GDAL project. Includes raster calc()
to evaluate a given R expression on a layer or stack of layers, with pixel x/y available as variables in the expression; and raster combine()
to identify and count unique pixel combinations across multiple input layers, with optional output of the pixel-level combination IDs. Provides raster display using base graphics'. Bindings to a subset of the OGR API are also included for managing vector data sources. Bindings to a subset of the Virtual Systems Interface ('VSI') are also included to support operations on GDAL virtual file systems. These are general utility functions that abstract file system operations on URLs, cloud storage services, Zip'/'GZip'/'7z'/'RAR archives, and in-memory files. gdalraster may be useful in applications that need scalable, low-level I/O, or prefer a direct GDAL API.
This package provides FFI bindings of GDK 4.