This package provides UI widget and layout functions for writing Shiny apps that work well on small screens.

This package provides an interface to use SPARQL to pose SELECT or UPDATE queries to an end-point.

This is a package for binomial and Poisson regression for clustered data, fixed and random effects with bootstrapping.

This package provides a pure Ruby implementation of the RFC 7519 OAuth JWT standard.

R implementation of Maximum Likelihood Principal Component Analysis The main idea of this package is to have an alternative way of PCA for subspace modeling that considers measurement errors. More details can be found in Peter D. Wentzell (2009) <doi:10.1016/B978-0-444-64165-6.03029-9>.

This package provides the robust gamma rank correlation coefficient as introduced by Bodenhofer, Krone, and Klawonn (2013) <DOI:10.1016/j.ins.2012.11.026> along with a permutation-based rank correlation test. The rank correlation coefficient and the test are explicitly designed for dealing with noisy numerical data.

The handling of an API key (misnomer for password) for protected data can be difficult. This package provides secure convenience functions for entering / handling API keys and pulling data directly into memory. By default it will load from REDCap instances, but other sources are injectable via inversion of control.

Providing just one primary function, readit uses a set of reasonable heuristics to apply the appropriate reader function to the given file path. As long as the data file has an extension, and the data is (or can be coerced to be) rectangular, readit() can probably read it.

This is a companion package of the book "R Programming: Zero to Pro" <https://r02pro.github.io/>. It contains the datasets used in the book and provides interactive exercises corresponding to the book. It covers a wide range of topics including visualization, data transformation, tidying data, data input and output.

This package provides a set of functions to simplify reading data from files. The main function, reader(), should read most common R datafile types without needing any parameters except the filename. Other functions provide simple ways of handling file paths and extensions, and automatically detecting file format and structure.

In order to facilitate parsing of http requests and creating appropriate responses this package provides two classes to handle a lot of the housekeeping involved in working with http exchanges. The infrastructure builds upon the rook specification and is thus well suited to be combined with httpuv based web servers.

BaseX <https://basex.org> is a XML database engine and a compliant XQuery 3.1 processor with full support of W3C Update Facility'. This package is a full client-implementation of the client/server protocol for BaseX and provides functionalities to create, manipulate and query on XML-data.

This package computes model and semi partial R squared with confidence limits for the linear and generalized linear mixed model (LMM and GLMM). The R squared measure from L. J. Edwards et al. (2008) is extended to the GLMM using penalized quasi-likelihood (PQL) estimation (see Jaeger et al. (2016)).

Parse a BibTeX file to a data.frame to make it accessible for further analysis and visualization.

Discrete factor analysis for dependent Poisson and negative binomial models with truncation, zero inflation, and zero inflated truncation.

This package provides methods for fitting macroevolutionary models to phylogenetic trees Pennell (2014) <doi:10.1093/bioinformatics/btu181>.

Integrated toolbox supporting common file formats used for intracranial Electroencephalography (iEEG) and deep-brain stimulation (DBS) study.

This package provides a collection of statistical tests for genetic association studies and summary data based Mendelian randomization.

Create tables from within R directly on Google Slides presentations. Currently supports matrix, data.frame and flextable objects.

Calculates MeDiA_K (means Mean Distance Association by K-nearest neighbor) in order to detect nonlinear associations.

Quickly create numeric matrices for machine learning algorithms that require them. It converts factor columns into onehot vectors.

This package provides tools for (automated and manual) quality control of the results of Epigenome-Wide Association Studies.

This package provides tools for (automated and manual) quality control of the results of Genome Wide Association Studies.

This package provides tools for scraping information from webpages and other XML contents, using XPath or CSS selectors.