Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

This package provides negative binomial models for two-group comparisons and regression inferences from RNA-sequencing data.

This package provides full screen and partial loading screens for Shiny with spinners, progress bars, and notifications.

This package provides two convenience functions assert() and test_pkg() to facilitate testing R packages.

Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.

This package provides a collection of templates to author preregistration documents for scientific studies in PDF format.

This package provides a multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution.

This package provides a library for working with graphs in the GFA format.

Use finite state transducers to compactly represent sets or maps of many strings (> 1 billion is possible).

This package provides a job queue that uses PostgreSQL for storing jobs and locking between worker processes.

This library provides methods to read Adobe Font Metrics (afm) files and use the data therein.

This pure ruby library provides spawn() which is almost perfectly compatible with ruby 1.9's.

Command-line tool and C library for reading files from popular stats packages like SAS, Stata and SPSS.

This package provides simple utility functions that are shared across several packages maintained by the Tanay lab.

Mediation analysis for multiple mediators by penalized structural equation models with different types of penalties depending on whether there are multiple mediators and only one exposure and one outcome variable (using sparse group lasso) or multiple exposures, multiple mediators, and multiple outcome variables (using lasso, L1, penalties).

This package provides struct RGB/RGBA/etc. for sharing pixels between crates + convenience methods for color manipulation. It allows no-copy high-level interoperability. It also adds common convenience methods and implements standard Rust traits to make `RGB`/`RGBA` pixels and slices first-class Rust objects.

It is devoted to the IVIVC linear level A with numerical deconvolution method. The latter is working for inequal and incompatible timepoints between impulse and response curves. A numerical convolution method is also available. Application domains include pharamaceutical industry QA/QC and R&D together with academic research.

Connect, execute, and parse results from the Daisi Microservice Platform <https://www.daisi.io/>. The rdaisi client includes a set of functionality that allows remote execution of microservices directly from R. Daisis allow R users to access a wide variety of Python functionality and interact with them natively.

This package provides algorithms to locate multiple distributional change-points in piecewise stationary time series. The algorithms are provably consistent, even in the presence of long-range dependencies. Knowledge of the number of change-points is not required. The code is written in Go and interfaced with R.

Parse a BibTeX file to a data.frame to make it accessible for further analysis and visualization.

Discrete factor analysis for dependent Poisson and negative binomial models with truncation, zero inflation, and zero inflated truncation.

This package provides methods for fitting macroevolutionary models to phylogenetic trees Pennell (2014) <doi:10.1093/bioinformatics/btu181>.

Integrated toolbox supporting common file formats used for intracranial Electroencephalography (iEEG) and deep-brain stimulation (DBS) study.

This package provides a collection of statistical tests for genetic association studies and summary data based Mendelian randomization.