This package provides a set of tools to explore the behaviour statistics used for forensic DNA interpretation when close relatives are involved. The package also offers some useful tools for exploring other forensic DNA situations.

To detecting rare variants for binary traits using general pedigrees, the pedigree disequilibrium tests are proposed by collapsing rare haplotypes/variants with/without weights. To run the test, MERLIN is needed in Linux for haplotyping.

Interactively build and explore public transit routes with r5r package via a graphical user interface in a shiny app. The underlying routing methods are described in Pereira et al. (2021) <doi:10.32866/001c.21262>.

An approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information on accumulation rates and their variability. See Blaauw & Christen (2011).

This package is a collection of tools to load R packages and automatically generate BibTeX files citing them as well as load and cache plain-text and Excel formatted data stored on GitHub, and from other sources.

This package provides a fast calculation of the Blyth-Still-Casella confidence interval. The implementation follows the StatXact 9 manual (Cytel 2010) and "Refining Binomial Confidence Intervals" by George Casella (1986) <doi:10.2307/3314658>.

This package provides a pipeline for the analysis of GRO-seq data.

This package provides basic features for the automated analysis of Affymetrix arrays.

This is the core package for the automated analysis of Affymetrix arrays.

This package performs a fast Wilcoxon rank sum test and auROC analysis.

This package provides functions used for local regression, likelihood and density estimation.

This package provides utilities for secure password hashing via the argon2 algorithm.

This package provides tools to calculate the Earth Mover's Distance (EMD).

This package provides a utility for R to parse a bibtex file.

This package provides miscellaneous helper functions for the development of R packages.

ERB is an easy to use, but also very powerful, template processor.

colorectal cancer mRNA and miRNA on 18 cell lines.

Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm.

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Nonparametric estimation of additive isotonic covariate effects for proportional hazards model.

The Biodem package provides a number of functions for Biodemographic analysis.

Streamlines the fitting of common Bayesian item response models using Stan.

Generator and density function for the Generalized Inverse Gaussian (GIG) distribution.

Implementation of the information matrix test for generalized partial credit models.