Toys / Webring for GNU Guix channels

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r-biotip 1.26.0

Propagated dependencies: r-cluster@2.1.8.2 r-doparallel@1.0.17 r-foreach@1.5.2 r-genomicranges@1.64.0 r-igraph@2.3.1 r-mass@7.3-65 r-psych@2.6.5 r-scran@1.40.0 r-stringr@1.6.0

Channel: guix

Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)

Home page: https://github.com/xyang2uchicago/BioTIP

Licenses: GPL 2

Build system: r

Synopsis: R package for characterization of biological tipping-point

Description:

This package adopts tipping-point theory to transcriptome profiles to help unravel disease regulatory trajectory.

r-giotto 4.2.2-1.7988300

Propagated dependencies: r-bluster@1.22.0 r-biocparallel@1.46.0 r-biocsingular@1.28.0 r-checkmate@2.3.4 r-data-table@1.18.4 r-dbscan@1.2.4 r-ggplot2@4.0.3 r-ggraph@2.2.2 r-giottoclass@0.4.10-1.15627a2 r-giottoutils@0.2.5-1.1ce82e5 r-giottovisuals@0.2.14-1.556d753 r-igraph@2.3.1 r-matrix@1.7-5 r-matrixgenerics@1.24.0 r-reticulate@1.46.0 r-scales@1.4.0 r-sparsematrixstats@1.24.0 r-terra@1.9-27 r-uwot@0.2.4 r-arrow@24.0.0 r-clusterr@1.3.6 r-complexheatmap@2.28.0 r-fitdistrplus@1.2-6 r-future-apply@1.20.2 r-ggdendro@0.2.0 r-limma@3.68.3 r-plotly@4.12.0 r-r-utils@2.13.0 r-rfast@2.1.5.2 r-rlang@1.2.0 r-rtsne@0.17

Channel: guix

Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)

Home page: https://github.com/drieslab/Giotto

Licenses: Expat

Build system: r

Synopsis: Spatial single-cell transcriptomics toolbox

Description:

This package provides a toolbox to process, analyze and visualize spatial single-cell expression data.

rcas-web 0.2.0

Dependencies: bash-minimal@5.2.37 r-minimal@4.6.0 r-rcas@1.38.0 r-biocmanager@1.30.27 guile@3.0.9 guile-json@4.7.3 guile-redis@2.2.0

Channel: guix

Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)

Home page: https://github.com/BIMSBbioinfo/rcas-web

Licenses: AGPL 3+

Build system: gnu

Synopsis: Web interface for RNA-centric annotation system (RCAS)

Description:

This package provides a simple web interface for the RNA-centric annotation system (RCAS).

r-npsurv 0.5-0

Propagated dependencies: r-lsei@1.3-1

Channel: guix

Location: gnu/packages/cran.scm (gnu packages cran)

Home page: https://www.stat.auckland.ac.nz/~yongwang

Licenses: GPL 2+

Build system: r

Synopsis: Nonparametric survival analysis

Description:

This package contains functions for non-parametric survival analysis of exact and interval-censored observations.

r-shades 1.4.0

Channel: guix

Location: gnu/packages/cran.scm (gnu packages cran)

Home page: https://github.com/jonclayden/shades

Licenses: Modified BSD

Build system: r

Synopsis: Simple color manipulation

Description:

This package provides functions for easily manipulating colors, creating color scales and calculating color distances.

r-svunit 1.0.8

Channel: guix

Location: gnu/packages/cran.scm (gnu packages cran)

Home page: https://github.com/SciViews/svUnit

Licenses: GPL 2

Build system: r

Synopsis: Unit, integration and system testing

Description:

This package provides a complete unit test system and functions to implement its GUI part.

r2ghidra 6.1.8

Dependencies: radare2@6.1.8 zlib@1.3.1

Channel: guix

Location: gnu/packages/engineering.scm (gnu packages engineering)

Home page: https://www.radare.org/

Licenses: LGPL 3

Build system: gnu

Synopsis: Native Ghidra Decompiler for radare2

Description:

r2ghidra is a radare2 plugin which integrates the Ghidra decompiler.

r-degseq 1.66.0

Propagated dependencies: r-qvalue@2.44.0

Channel: guix-bioc

Location: guix-bioc/packages/d.scm (guix-bioc packages d)

Home page: https://bioconductor.org/packages/DEGseq

Licenses: FSDG-compatible

Build system: r

Synopsis: Identify Differentially Expressed Genes from RNA-seq data

Description:

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

r-icheck 1.42.0

Propagated dependencies: r-scatterplot3d@0.3-45 r-rgl@1.3.36 r-randomforest@4.7-1.2 r-preprocesscore@1.74.0 r-mass@7.3-65 r-lumi@2.64.0 r-lmtest@0.9-40 r-limma@3.68.3 r-gplots@3.3.0 r-geneselectmmd@2.56.0 r-biobase@2.72.0 r-affy@1.90.0

Channel: guix-bioc

Location: guix-bioc/packages/i.scm (guix-bioc packages i)

Home page: https://bioconductor.org/packages/iCheck

Licenses: GPL 2+

Build system: r

Synopsis: QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Description:

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

r-sctgif 1.26.0

Propagated dependencies: r-tibble@3.3.1 r-tagcloud@0.7.0 r-summarizedexperiment@1.42.0 r-singlecellexperiment@1.34.0 r-schex@1.26.0 r-scales@1.4.0 r-s4vectors@0.50.1 r-rmarkdown@2.31 r-rcpp@1.1.1-1.1 r-rcolorbrewer@1.1-3 r-plotly@4.12.0 r-nntensor@1.4.0 r-msigdbr@26.1.0 r-knitr@1.51 r-igraph@2.3.1 r-gseabase@1.74.0 r-ggplot2@4.0.3 r-biocstyle@2.40.0 r-biobase@2.72.0

Channel: guix-bioc

Location: guix-bioc/packages/s.scm (guix-bioc packages s)

Home page: https://bioconductor.org/packages/scTGIF

Licenses: Artistic License 2.0

Build system: r

Synopsis: Cell type annotation for unannotated single-cell RNA-Seq data

Description:

scTGIF connects the cells and the related gene functions without cell type label.

r-subseq 1.42.0

Propagated dependencies: r-tidyr@1.3.2 r-qvalue@2.44.0 r-magrittr@2.0.5 r-ggplot2@4.0.3 r-dplyr@1.2.1 r-digest@0.6.39 r-data-table@1.18.4 r-biobase@2.72.0

Channel: guix-bioc

Location: guix-bioc/packages/s.scm (guix-bioc packages s)

Home page: http://github.com/StoreyLab/subSeq

Licenses: Expat

Build system: r

Synopsis: Subsampling of high-throughput sequencing count data

Description:

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

r-vtpnet 0.52.0

Propagated dependencies: r-gwascat@2.44.0 r-graph@1.90.0 r-genomicranges@1.64.0 r-foreach@1.5.2 r-doparallel@1.0.17

Channel: guix-bioc

Location: guix-bioc/packages/v.scm (guix-bioc packages v)

Home page: https://bioconductor.org/packages/vtpnet

Licenses: Artistic License 2.0

Build system: r

Synopsis: variant-transcription factor-phenotype networks

Description:

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828.

r-corona 0.3.0

Propagated dependencies: r-reshape2@1.4.5 r-qicharts2@0.8.1 r-plyr@1.8.9 r-gridextra@2.3 r-ggplot2@4.0.3 r-gganimate@1.0.11

Channel: guix-cran

Location: guix-cran/packages/c.scm (guix-cran packages c)

Home page: https://cran.r-project.org/package=corona

Licenses: GPL 3

Build system: r

Synopsis: Coronavirus ('Rona') Data Exploration

Description:

Manipulate and view coronavirus data and other societally relevant data at a basic level.

r-cmapss 0.1.1

Propagated dependencies: r-rdpack@2.6.6

Channel: guix-cran

Location: guix-cran/packages/c.scm (guix-cran packages c)

Home page: https://cran.r-project.org/package=CMAPSS

Licenses: GPL 3

Build system: r

Synopsis: Commercial Modular Aero-Propulsion System Simulation Data Set

Description:

This package contains the Commercial Modular Aero-Propulsion System Simulation (C-MAPSS) data set.

r-epxtor 0.4-1

Propagated dependencies: r-xml@3.99-0.23 r-httr@1.4.8

Channel: guix-cran

Location: guix-cran/packages/e.scm (guix-cran packages e)

Home page: https://cran.r-project.org/package=epxToR

Licenses: GPL 3

Build system: r

Synopsis: Import 'Epidata' XML Files '.epx'

Description:

Import data from Epidata XML files .epx and convert it to R data structures.

r-forams 2.0-6

Propagated dependencies: r-vegan@2.7-3

Channel: guix-cran

Location: guix-cran/packages/f.scm (guix-cran packages f)

Home page: https://cran.r-project.org/package=forams

Licenses: GPL 2+

Build system: r

Synopsis: Foraminifera and Community Ecology Analyses

Description:

SHE, FORAM Index and ABC Method analyses and custom plot functions for community data.

r-lmmpar 0.1.0

Propagated dependencies: r-plyr@1.8.9 r-mnormt@2.1.2 r-matrixcalc@1.0-6 r-mass@7.3-65 r-doparallel@1.0.17 r-bigmemory@4.6.4

Channel: guix-cran

Location: guix-cran/packages/l.scm (guix-cran packages l)

Home page: https://github.com/fulyagokalp/lmmpar

Licenses: Expat

Build system: r

Synopsis: Parallel Linear Mixed Model

Description:

Embarrassingly Parallel Linear Mixed Model calculations spread across local cores which repeat until convergence.

r-lincal 1.0.1

Channel: guix-cran

Location: guix-cran/packages/l.scm (guix-cran packages l)

Home page: https://cran.r-project.org/package=LinCal

Licenses: GPL 2

Build system: r

Synopsis: Static Univariate Frequentist and Bayesian Linear Calibration

Description:

Estimate and confidence/credible intervals for an unknown regressor x0 given an observed y0.

r-nephro 1.5

Channel: guix-cran

Location: guix-cran/packages/n.scm (guix-cran packages n)

Home page: https://cran.r-project.org/package=nephro

Licenses: GPL 3+

Build system: r

Synopsis: Utilities for Nephrology

Description:

Set of functions to estimate kidney function and other traits of interest in nephrology.

r-svhttp 1.0.5

Propagated dependencies: r-svmisc@1.4.3

Channel: guix-cran

Location: guix-cran/packages/s.scm (guix-cran packages s)

Home page: https://github.com/SciViews/svHttp

Licenses: GPL 2

Build system: r

Synopsis: 'SciViews::R' - HTTP Server

Description:

This package provides a simple HTTP server allows to connect GUI clients to R.

r-versus 0.3.1

Propagated dependencies: r-vctrs@0.7.3 r-tidyselect@1.2.1 r-tibble@3.3.1 r-rlang@1.2.0 r-purrr@1.2.2 r-pillar@1.11.1 r-glue@1.8.1 r-dplyr@1.2.1 r-data-table@1.18.4 r-collapse@2.1.7 r-cli@3.6.6

Channel: guix-cran

Location: guix-cran/packages/v.scm (guix-cran packages v)

Home page: https://eutwt.github.io/versus/

Licenses: Expat

Build system: r

Synopsis: Compare Data Frames

Description:

This package provides a toolset for interactively exploring the differences between two data frames.

r-visatc 1.0.0

Propagated dependencies: r-tidyr@1.3.2 r-rlang@1.2.0 r-plotly@4.12.0 r-igraph@2.3.1 r-graphlayouts@1.2.3 r-dplyr@1.2.1

Channel: guix-cran

Location: guix-cran/packages/v.scm (guix-cran packages v)

Home page: https://jnm212.github.io/visATC/

Licenses: GPL 3+

Build system: r

Synopsis: Visualise the Anatomical Therapeutic Chemical (ATC) Hierarchy

Description:

Visualisation and subsetting of the World Health Organisation Anatomical Therapeutic Chemical (ATC) classification system.

r-rdisop 1.72.0

Propagated dependencies: r-rcpp@1.1.1-1.1

Channel: guix

Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)

Home page: https://github.com/sneumann/Rdisop

Licenses: GPL 2

Build system: r

Synopsis: Decomposition of isotopic patterns

Description:

This is a package for identification of metabolites using high precision mass spectrometry. MS peaks are used to derive a ranked list of sum formulae, alternatively for a given sum formula the theoretical isotope distribution can be calculated to search in MS peak lists.

r-qte-rd 1.2.0

Propagated dependencies: r-quantreg@6.1 r-plotrix@3.8-14

Channel: guix-cran

Location: guix-cran/packages/q.scm (guix-cran packages q)

Home page: https://cran.r-project.org/package=QTE.RD

Licenses: GPL 3+

Build system: r

Synopsis: Quantile Treatment Effects under the Regression Discontinuity Design

Description:

This package provides comprehensive methods for testing, estimating, and conducting uniform inference on quantile treatment effects (QTEs) in sharp regression discontinuity (RD) designs, incorporating covariates and implementing robust bias correction methods of Qu, Yoon, Perron (2024) <doi:10.1162/rest_a_01168>.

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