Estimates monotone regression and variance functions in a nonparametric model, based on Dette, Holger, Neumeyer, and Pilz (2006) <doi:10.3150/bj/1151525131>.

This package provides a convenient interface in OpenMx for building Estabrook's (2015) <doi:10.1037/a0034523> Measurement Model of Derivatives (MMOD).

Nonparametric smoothing methods for density and regression estimation involving circular data, including the estimation of the mean regression function and other conditional characteristics.

Sejong(http://www.sejong.or.kr/) corpus and Hannanum(http://semanticweb.kaist.ac.kr/home/index.php/HanNanum) dictionaries for KoNLP.

Allows a Simile model saved as a compiled binary to be loaded, parameterized, executed and interrogated. This version works with Simile v6 on.

Fits mixtures of multivariate t-distributions (with eigen-decomposed covariance structure) via the expectation conditional-maximization algorithm under a clustering or classification paradigm.

Estimate ambient vitamin D-effective or erythemal dose using ultraviolet radiation (UV) data from the TEMIS database, based on date and geographical location.

This package provides a large English words list and tools to find words by patterns. In particular, anagram finder and scrabble word finder.

For multivariate datasets, this function enables the estimation of missing data using the Weighted AVERage of all possible Regressions using the data available.

LLD is a high-performance linker, built as a set of reusable components which highly leverage existing libraries in the larger LLVM Project.

recoup calculates and plots signal profiles created from short sequence reads derived from Next Generation Sequencing technologies. The profiles provided are either sumarized curve profiles or heatmap profiles. Currently, recoup supports genomic profile plots for reads derived from ChIP-Seq and RNA-Seq experiments. The package uses ggplot2 and ComplexHeatmap graphics facilities for curve and heatmap coverage profiles respectively.

This package provides a collection of fast statistical and utility functions for data analysis. Functions for regression, maximum likelihood, column-wise statistics and many more have been included. C++ has been utilized to speed up the functions. References: Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>.

This package provides functions to retrieve data and metadata from providers that disseminate data by means of SDMX web services. SDMX (Statistical Data and Metadata eXchange) is a standard that has been developed with the aim of simplifying the exchange of statistical information. More about the SDMX standard and the SDMX Web Services can be found at: <https://sdmx.org>.

Create rich and fully interactive 3D visualizations of molecular data. Visualizations can be included in Shiny apps and R markdown documents, or viewed from the R console and RStudio Viewer. r3dmol includes an extensive API to manipulate the visualization after creation, and supports getting data out of the visualization into R. Based on the 3dmol.js and the htmlwidgets R package.

This package provides a Tidy implementation of grouping sets', rollup and cube - extensions of the group_by clause that allow for computing multiple group_by clauses in a single statement. For more detailed information on these functions, please refer to "Enhanced Aggregation, Cube, Grouping and Rollup" <https://cwiki.apache.org/confluence/display/Hive/Enhanced+Aggregation%2C+Cube%2C+Grouping+and+Rollup>.

Non-linear inversion for hypocenter estimation and analysis of seismic data collected continuously, or in trigger mode. The functions organize other functions from RSEIS and GEOmap to help researchers pick, locate, and store hypocenters for detailed seismic investigation. Error ellipsoids and station influence are estimated via jackknife analysis. References include Iversen, E. S., and J. M. Lees (1996)<doi:10.1785/BSSA0860061853>.

This package provides a computational resource designed to accurately detect microbial nucleic acids while filtering out contaminants and false-positive taxonomic assignments from standard transcriptomic sequencing of mammalian tissues. For more details, see Ghaddar (2023) <doi:10.1038/s43588-023-00507-1>. This implementation leverages the polars package for fast and systematic microbial signal recovery and denoising from host tissue genomic sequencing.

This package provides a collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control.

Rinutils is a set of C headers containing macros and static functions that have been extracted from Shlomi Fish's projects.

Pry is an IRB alternative and runtime developer console for Ruby. It features syntax highlighting, a plugin architecture, runtime invocation, and source and documentation browsing.

Ruby/Git is a Ruby library that can be used to create, read and manipulate Git repositories by wrapping system calls to the git binary.

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments.

Framework providing basic pedigree analysis and plotting utilities as well as a variety of methods to evaluate familial aggregation of traits in large pedigrees.

This package provides sample files and data for the vignettes of pepStat and Pviz as well as peptide collections for HIV and SIV.