This package provides negative binomial models for two-group comparisons and regression inferences from RNA-sequencing data.

Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.

This package provides a collection of templates to author preregistration documents for scientific studies in PDF format.

This package provides full screen and partial loading screens for Shiny with spinners, progress bars, and notifications.

Functions for modelling that help you seamlessly integrate modelling into a pipeline of data manipulation and visualisation.

This package provides a multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution.

This package provides two convenience functions assert() and test_pkg() to facilitate testing R packages.

This library provides methods to read Adobe Font Metrics (afm) files and use the data therein.

This package provides a job queue that uses PostgreSQL for storing jobs and locking between worker processes.

This pure ruby library provides spawn() which is almost perfectly compatible with ruby 1.9's.

Command-line tool and C library for reading files from popular stats packages like SAS, Stata and SPSS.

This package provides simple utility functions that are shared across several packages maintained by the Tanay lab.

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

This package contains functions for bias-Corrected Forecasting and Bootstrap Prediction Intervals for Autoregressive Time Series.

This package provides a finite mixture of Zero-Inflated Poisson (ZIP) models for analyzing criminal trajectories.

Fit a CoxSEI (Cox type Self-Exciting Intensity) model to right-censored counting process data.

Identifies code blocks that have a high level of similarity within a set of R files.

Load configuration from a .env file, that is in the current working directory, into environment variables.

Streamlines the process of updating changelogs (NEWS.md) and versioning R packages developed in git repositories.

This package provides a simple way to unload none-base packages and remove all global variables.

This package provides a tool for registering (aligning) gene expression profiles between reference and query data.

This package provides a series of aliases to commonly used but difficult to remember ggplot2 sequences.

Annotation of ggplot2 plots with arbitrary TikZ code, using absolute data or relative plot coordinates.

This package provides a ggplot2 extension that enables robust image grobs in panels and theme elements.