Calculate the Bayesian posterior/predictive probability and determine the sample size and stopping boundaries for single-arm Phase II design.

This package contains data files to accompany Smithson & Merkle (2013), Generalized Linear Models for Categorical and Continuous Limited Dependent Variables.

This package provides Apache Spark style window aggregation for R dataframes and remote dbplyr tables via mutate in dplyr flavour.

Helps systematize and ease the process of building unit tests with the testthat package by providing tools for generating expectations.

DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.

Fingerprint generation of flow cytometry data, used to facilitate the application of machine learning and datamining tools for flow cytometry.

Simultaneous identification of copy number states and genotype calls for regions of either copy number variations or copy number aberrations.

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

This package enables you to define a command-line interface by just giving it a description in the specific format.

This package provides functions for assessing the replication/preservation of a network module's topology across datasets through permutation testing.

This package provides a simple client package for the Amazon Web Services (AWS) Simple Storage Service (S3) REST API.

Syn is a parsing library for parsing a stream of Rust tokens into a syntax tree of Rust source code.

Syn is a parsing library for parsing a stream of Rust tokens into a syntax tree of Rust source code.

Syn is a parsing library for parsing a stream of Rust tokens into a syntax tree of Rust source code.

Syn is a parsing library for parsing a stream of Rust tokens into a syntax tree of Rust source code.

This package provides an implementation of union-find / congruence-closure in Rust. It was extracted from rustc for independent experimentation.

Syn is a parsing library for parsing a stream of Rust tokens into a syntax tree of Rust source code.

This package provides an implementation of union-find / congruence-closure in Rust. It was extracted from rustc for independent experimentation.

Allows calculation of rarity weights for species and indices of rarity for assemblages of species according to different methods (Leroy et al. 2012, Insect. Conserv. Divers. 5:159-168 <doi:10.1111/j.1752-4598.2011.00148.x>; Leroy et al. 2013, Divers. Distrib. 19:794-803 <doi:10.1111/ddi.12040>).

This package provides a programmatic interface to the web service methods provided by Global Biotic Interactions (GloBI) (<https://www.globalbioticinteractions.org/>). GloBI provides access to spatial-temporal species interaction records from sources all over the world. rglobi provides methods to search species interactions by location, interaction type, and taxonomic name.

For the calculation of sample size or power in a two-group repeated measures design, accounting for attrition and accommodating a variety of correlation structures for the repeated measures; details of the method can be found in the scientific paper: Donald Hedeker, Robert D. Gibbons, Christine Waternaux (1999) <doi:10.3102/10769986024001070>.

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

Extracts tagged text from markdown manuscripts for inclusion in dynamically generated revision letters. Provides an R markdown template based on papaja::revision_letter_pdf() with comment cross-referencing, a system for managing multiple sections of extracted text, and a way to automatically determine the page number of quoted sections from PDF manuscripts.

Calculate the operating characteristics of the Bayesian Optimal Interval with Back Filling Design for dose escalation in early-phase oncology trials.