IRB is an interactive Ruby command-line tool for REPL (Read Eval Print Loop).

This package provides robust outlier detection techniques for identifying anomalies in multivariate data, with a focus on methods that remain effective under non-Gaussian distributions. For more details see Saluja, Parlak, and Mejia (2026+) <doi:10.48550/arXiv.2505.11806>.

The Regional Vulnerability Index (RVI), a statistical measure of brain structural abnormality, quantifies an individual's similarity to the expected pattern (effect size) of deficits in schizophrenia (Kochunov P, Fan F, Ryan MC, et al. (2020) <doi:10.1002/hbm.25045>).

Random univariate and multivariate finite mixture model generation, estimation, clustering, latent class analysis and classification. Variables can be continuous, discrete, independent or dependent and may follow normal, lognormal, Weibull, gamma, Gumbel, binomial, Poisson, Dirac, uniform or circular von Mises parametric families.

Download large sections of GenBank <https://www.ncbi.nlm.nih.gov/genbank/> and generate a local SQL-based database. A user can then query this database using restez functions or through rentrez <https://CRAN.R-project.org/package=rentrez> wrappers.

R6 class interface for handling relational database connections using DBI package as backend. The class allows handling of connections to e.g. PostgreSQL, MariaDB and SQLite. The purpose is having an intuitive object allowing straightforward handling of SQL databases.

This package provides a series of functions to call AD Model Builder (i.e., compile and run models) from within R, read the results back into R as admb objects, and provide standard accessors (i.e. coef(), vcov(), etc.).

This package provides a programmatic client for the eBird database (<https://ebird.org/home>), including functions for searching for bird observations by geographic location (latitude, longitude), eBird hotspots, location identifiers, by notable sightings, by region, and by taxonomic name.

This package provides a set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.

The minimum covariance determinant estimator is used to perform robust quadratic discriminant analysis, including cross-validation. References: Friedman J., Hastie T. and Tibshirani R. (2009). "The elements of statistical learning", 2nd edition. Springer, Berlin. <doi:10.1007/978-0-387-84858-7>.

This package adopts tipping-point theory to transcriptome profiles to help unravel disease regulatory trajectory.

This package provides a toolbox to process, analyze and visualize spatial single-cell expression data.

This package provides a simple web interface for the RNA-centric annotation system (RCAS).

This package contains functions for non-parametric survival analysis of exact and interval-censored observations.

This package provides a complete unit test system and functions to implement its GUI part.

This package provides functions for easily manipulating colors, creating color scales and calculating color distances.

r2ghidra is a radare2 plugin which integrates the Ghidra decompiler.

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

scTGIF connects the cells and the related gene functions without cell type label.

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828.

This package contains the Commercial Modular Aero-Propulsion System Simulation (C-MAPSS) data set.

Manipulate and view coronavirus data and other societally relevant data at a basic level.