Fits Royston-Parmar flexible parametric survival models (Royston and Parmar, 2002) <doi:10.1002/sim.1203> on the log cumulative hazard, odds, and probit scales, with time-varying (non-proportional) covariate effects via restricted cubic splines in log time. The likelihood and its analytic gradient are evaluated in C++ with RcppParallel', giving large speedups over pure-R implementations for large datasets.

This package provides a collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control.

Rinutils is a set of C headers containing macros and static functions that have been extracted from Shlomi Fish's projects.

Pry is an IRB alternative and runtime developer console for Ruby. It features syntax highlighting, a plugin architecture, runtime invocation, and source and documentation browsing.

Ruby/Git is a Ruby library that can be used to create, read and manipulate Git repositories by wrapping system calls to the git binary.

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments.

Framework providing basic pedigree analysis and plotting utilities as well as a variety of methods to evaluate familial aggregation of traits in large pedigrees.

This package provides sample files and data for the vignettes of pepStat and Pviz as well as peptide collections for HIV and SIV.

This package provides enhancements on the Sweave() function in the base package. In particular a facility for caching code chunk results is included.

Adaptive wavelet lifting transforms for signal denoising using optimal local neighbourhood regression, from Nunes et al. (2006) <doi:10.1007/s11222-006-6560-y>.

This package provides functions to implement a Hwang(2021) <doi:10.2139/ssrn.3866876> estimator, which bounds an omitted variable bias using auxiliary data.

This package provides a collection of functions to analyse, visualize and interpret wind data and to calculate the potential energy production of wind turbines.

Regression for data too large to fit in memory. This package functions exactly like the biglm package, but works with later versions of R.

Successive pulses from CP 1919, the first pulsar discovered. The pulses occur every 1.337 seconds. They are caused by rapidly spinning neutron star.

Wraps the CIRCE (<https://github.com/ohdsi/circe-be>) Java library allowing cohort definition expressions to be edited and converted to Markdown or SQL'.

This package implements a Bayesian algorithm for overcoming weak separation in Bayesian latent class analysis. Reference: Li et al. (2023) <arXiv:2306.04700>.

The funFEM algorithm (Bouveyron et al., 2014) allows to cluster functional data by modeling the curves within a common and discriminative functional subspace.

Integrates with your RMarkdown documents to automatically publish figures to the <https://GoFigr.io> service. Supports both knitr and interactive execution within RStudio'.

This package implements a flexible nonlinear modelling framework for nonstationary generalized extreme value analysis in hydroclimatology following Cannon (2010) <doi:10.1002/hyp.7506>.

This package provides a set of functions to analyse and compare texts, using classical text mining functions, as well as those from theoretical ecology.

This package provides tools for probabilistic taxon assignment with informatic sequence classification trees. See Wilkinson et al (2018) <doi:10.7287/peerj.preprints.26812v1>.

This package produces clean and neat Markdown log file and also provide an argument to include the function call inside the Markdown log.

Mixed effects cumulative and baseline logit link models for the analysis of ordinal or nominal responses, with non-parametric distribution for the random effects.

Evaluation and optimization of the Fisher Information Matrix in NonLinear Mixed Effect Models using Markov Chains Monte Carlo for continuous and discrete data.