This package provides functions for reading cancer record files which follow a format defined by the North American Association of Central Cancer Registries (NAACCR).

Converts numeric vectors to character vectors of English number names. Provides conversion to cardinals, ordinals, numerators, and denominators. Supports negative and non-integer numbers.

Density, distribution function, quantile function, and random generation function based on Kittipong Klinjan,Tipat Sottiwan and Sirinapa Aryuyuen (2024)<DOI:10.28919/cmbn/8833>.

Wrangle and annotate different types of political texts. It also introduces Urgency Analysis, a new method for the analysis of urgency in political texts.

Nonlinear and Penalized parametric modeling of quantile regression coefficient functions. Sottile G, Frumento P, Chiodi M and Bottai M (2020) <doi:10.1177/1471082X19825523>.

This package provides a set of tools inspired by Stata to explore data.frames ('summarize', tabulate', xtile', pctile', binscatter', elapsed quarters/month, lead/lag).

Univariate spline regression. It is possible to add the shape constraint of unimodality and predefined or self-defined penalties on the B-spline coefficients.

Model relational and durational events in a counting process framework, with functions for estimating and simulating Relational Event Models (REM) and Durational Event Models (DEM). Includes support for time-varying covariates, windowed statistics, and high-dimensional node-level fixed effects. References include Fritz et al. (2026) "Scalable Durational Event Models: Application to Physical and Digital Interactions" <doi:10.48550/arXiv.2504.00049>.

This package implements the empirical Bayes ranking method described in Henderson and Hartman (2025) <doi:10.48550/arXiv.2511.16530>. The data structure of interest is a collection of cluster-specific effect size estimates, associated standard errors for these estimates, and cluster-level covariates. Estimates of the rankings of the cluster-specific effect sizes after adjusting for cluster-level covariates are generated.

This package provides an interface to the Vamp audio analysis plugin system <https://www.vamp-plugins.org/> developed by Queen Mary University of London's Centre for Digital Music. Enables loading and running Vamp plugins for various audio analysis tasks including tempo detection, onset detection, spectral analysis, and audio feature extraction. Supports mono and stereo audio with automatic channel adaptation and domain conversion.

Function for adapting the shape of the random walk Metropolis proposal as specified by robust adaptive Metropolis algorithm by Vihola (2012) <doi:10.1007/s11222-011-9269-5>. The package also includes fast functions for rank-one Cholesky update and downdate. These functions can be used directly from R or the corresponding C++ header files can be easily linked to other R packages.

This package provides functions to compute recentered influence functions (RIF) of a distributional variable at the mean, quantiles, variance, gini or any custom functional of interest. The package allows to regress the RIF on any number of covariates. Generic print, plot and summary functions are also provided. Reference: Firpo, Sergio, Nicole M. Fortin, and Thomas Lemieux. (2009) <doi:10.3982/ECTA6822>. "Unconditional Quantile Regressions.".

This web client interfaces Unpaywall <https://unpaywall.org/products/api>, formerly oaDOI, a service finding free full-texts of academic papers by linking DOIs with open access journals and repositories. It provides unified access to various data sources for open access full-text links including Crossref and the Directory of Open Access Journals (DOAJ). API usage is free and no registration is required.

This package implements the Simulating Optimal FUNctioning framework for site-scale simulations of ecosystem processes, including model calibration. It contains Fortran 90 modules for the P-model (Stocker et al. (2020) <doi:10.5194/gmd-13-1545-2020>), SPLASH (Davis et al. (2017) <doi:10.5194/gmd-10-689-2017>) and BiomeE (Weng et al. (2015) <doi:10.5194/bg-12-2655-2015>).

This package provides routines for parsing Affymetrix data files based upon file format information. The primary focus is on accessing the CEL and CDF file formats.

The parody package provides routines for univariate and multivariate outlier detection with a focus on parametric methods, but support for some methods based on resistant statistics.

This package converts the output of the Sailfish and Salmon RNA-seq quantification tools so that it can be used with the Sleuth differential analysis package.

randfold computes the probability that, for a given sequence, the Minimum Free Energy (MFE) of the secondary structure is different from MFE computed with random sequences.

SCENIC (Single-cell regulatory network inference and clustering) is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

This package implements a generalized version of principal components analysis (GLM-PCA) for dimension reduction of non-normally distributed data such as counts or binary matrices.

This package provides density, distribution, quantile and hazard functions of a stable variate, as well as generalized regression models for the parameters of a stable distribution.

This package implements targeted minimum loss-based estimators of counterfactual means and causal effects that are doubly-robust with respect both to consistency and asymptotic normality.

This package provides functions for viewing 2D and 3D data, including perspective plots, slice plots, surface plots, scatter plots, etc. It includes data sets from oceanography.

This package computes and displays complex tables of summary statistics. Output may be in LaTeX, HTML, plain text, or an R matrix for further processing.