R package accompanying the book Working with dynamic models for agriculture and environment, by Daniel Wallach (INRA), David Makowski (INRA), James W. Jones (U.of Florida), Francois Brun (ACTA). 3rd edition 2018-09-27.

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

This package identifies differential expression in high-throughput count data, such as that derived from next-generation sequencing machines, calculating estimated posterior likelihoods of differential expression (or more complex hypotheses) via empirical Bayesian methods.

This package provides a set of annotation maps describing the entire Human Disease Ontology. The annotation data comes from https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology.

The stageR package allows automated stage-wise analysis of high-throughput gene expression data. The method is published in Genome Biology at https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1277-0.

This package provides functions for analyzing multivariate data. Dependencies of the distribution of the specified variable (response variable) to other variables (explanatory variables) are derived and evaluated by the Akaike Information Criterion (AIC).

This package provides an efficient interface to MPI by utilizing S4 classes and methods with a focus on Single Program/Multiple Data (SPMD) parallel programming style, which is intended for batch parallel execution.

This package provides a pure Rust implementation of the Digital Signature Algorithm as specified in FIPS 186-4 (Digital Signature Standard), providing RFC6979 deterministic signatures as well as support for added entropy.

This is a Library to program x86 (amd64) hardware. It contains x86 specific data structure descriptions, data-tables, as well as convenience function to call assembly instructions typically not exposed in higher level languages.

Mio is a fast, low-level I/O library for Rust focusing on non-blocking APIs and event notification for building I/O apps with as little overhead as possible over the OS abstractions.

Mio is a fast, low-level I/O library for Rust focusing on non-blocking APIs and event notification for building I/O apps with as little overhead as possible over the OS abstractions.

This package provides Rust bindings to the JNI. It implements native Java methods for JVM and Android in Rust, call Java code from Rust, embed JVM in Rust applications and use any Java libraries.

Mio is a fast, low-level I/O library for Rust focusing on non-blocking APIs and event notification for building I/O apps with as little overhead as possible over the OS abstractions.

This package provides Rust bindings to the JNI. It implements native Java methods for JVM and Android in Rust, call Java code from Rust, embed JVM in Rust applications and use any Java libraries.

This package provides Rust bindings to the JNI. It implements native Java methods for JVM and Android in Rust, call Java code from Rust, embed JVM in Rust applications and use any Java libraries.

This is a Library to program x86 (amd64) hardware. It contains x86 specific data structure descriptions, data-tables, as well as convenience function to call assembly instructions typically not exposed in higher level languages.

This package provides Rust bindings to the JNI. It implements native Java methods for JVM and Android in Rust, call Java code from Rust, embed JVM in Rust applications and use any Java libraries.

Mio is a fast, low-level I/O library for Rust focusing on non-blocking APIs and event notification for building I/O apps with as little overhead as possible over the OS abstractions.

Ruby-FFI is a Ruby extension for programmatically loading dynamic libraries, binding functions within them, and calling those functions from Ruby code. Moreover, a Ruby-FFI extension works without changes on Ruby and JRuby.

This package provides a Common Lisp library for fetching and parsing RSS feeds data via HTTP. Currently, it supports RSS versions 0.90, 0.91, and 0.92 as well as RSS version 2.

Regrader is a delay effect where the repeats degrade in resolution. This is an unofficial port of the Regrader plugin created by Igorski. It is available as an LV2 plugin and a standalone JACK application.

rust-swc is a typescript/javascript compiler. It consumes a javascript or typescript file which uses recently added features like async-await and emits javascript code which can be executed on old browsers.

Robust categorical data analysis based on the theory of C-estimation developed in Welz (2024) <doi:10.48550/arXiv.2403.11954>. For now, the package only implements robust estimation of polychoric correlation as proposed in Welz, Mair and Alfons (2024) <doi:10.48550/arXiv.2407.18835> with methods for printing and plotting. We will implement further models in future releases. In addition, the package is still experimental, so input arguments and class structure may change in future releases.

The traditional linear regression trend, Modified Mann-Kendall (MK) non-parameter trend and bootstrap trend are included in this package. Linear regression trend is rewritten by .lm.fit'. MK trend is rewritten by Rcpp'. Finally, those functions are about 10 times faster than previous version in R. Reference: Hamed, K. H., & Rao, A. R. (1998). A modified Mann-Kendall trend test for autocorrelated data. Journal of hydrology, 204(1-4), 182-196. <doi:10.1016/S0022-1694(97)00125-X>.