Routine that allows the user to run several goodness-of-fit tests. It also combines the tests and returns a properly adjusted family-wise p value. Details can be found in <arXiv:2007.04727>
.
Truncation of univariate probability distributions. The probability distribution can come from other packages so long as the function names follow the standard d, p, q, r naming format. Also other univariate probability distributions are included.
Simplifies access to Tunisian government open data from <https://data.gov.tn/fr/>. Queries datasets by theme, author, or keywords, retrieves metadata, and gets structured results ready for analysis; all through the official CKAN API.
Visualizing of distributions of covariance matrices. The package implements the methodology described in Tokuda, T., Goodrich, B., Van Mechelen, I., Gelman, A., & Tuerlinckx, F. (2012) <https://sites.stat.columbia.edu/gelman/research/unpublished/Visualization.pdf>.
This package provides a convenient interface for constructing plots to visualize the fit of regression models arising from a wide variety of models in R ('lm', glm', coxph', rlm', gam', locfit', lmer', randomForest
', etc.).
Generates Realizations of First-Order Integer Valued Autoregressive Processes with Zero-Inflated Innovations (ZINAR(1)) and Estimates its Parameters as described in Garay et al. (2021) <doi:10.1007/978-3-030-82110-4_2>.
This package contains consensus genomic signatures (CGS) for experimental cell-line specific gene knock-outs as well as baseline gene expression data for a subset of experimental cell-lines. Intended for use with package KEGGlincs.
The seqCAT
package uses variant calling data (in the form of VCF files) from high throughput sequencing technologies to authenticate and validate the source, function and characteristics of biological samples used in scientific endeavours.
This package provides a set of signal processing functions originally written for Matlab and GNU Octave. It includes filter generation utilities, filtering functions, resampling routines, and visualization of filter models. It also includes interpolation functions.
The tensor product of two arrays is notionally an outer product of the arrays collapsed in specific extents by summing along the appropriate diagonals. This package allows you to compute the tensor product of arrays.
This is a package for the manipulation of genetic data (SNPs). Computation of genetic relationship matrix (GRM) and dominance matrix, linkage disequilibrium (LD), and heritability with efficient algorithms for linear mixed models (AIREML).
This package provides double and inverse double over Galois Field - GF(2^n). This trait is implemented for 64, 128 and 256 bit block sizes. Big-endian order is used. WARNING: Block must be aligned!
Wio is a middle-level wrapper around various things in Windows API. It is designed to be a very thin layer around Windows API to provide a safe Rusty API but without hiding any functionality.
Calculates periodograms based on (robustly) fitting periodic functions to light curves (irregularly observed time series, possibly with measurement accuracies, occurring in astroparticle physics). Three main functions are included: RobPer()
calculates the periodogram. Outlying periodogram bars (indicating a period) can be detected with betaCvMfit()
. Artificial light curves can be generated using the function tsgen()
. For more details see the corresponding article: Thieler, Fried and Rathjens (2016), Journal of Statistical Software 69(9), 1-36, <doi:10.18637/jss.v069.i09>.
Compute the repeated measures correlation, a statistical technique for determining the overall within-individual relationship among paired measures assessed on two or more occasions, first introduced by Bland and Altman (1995). Includes functions for diagnostics, p-value, effect size with confidence interval including optional bootstrapping, as well as graphing. Also includes several example datasets. For more details, see the web documentation <https://lmarusich.github.io/rmcorr/index.html> and the original paper: Bakdash and Marusich (2017) <doi:10.3389/fpsyg.2017.00456>.
Automatic open data acquisition from resources of Polish Head Office of Geodesy and Cartography ('GŠówny UrzÄ d Geodezji i Kartografii') (<https://www.gov.pl/web/gugik>). Available datasets include various types of numeric, raster and vector data, such as orthophotomaps, digital elevation models (digital terrain models, digital surface model, point clouds), state register of borders, spatial databases, geometries of cadastral parcels, 3D models of buildings, and more. It is also possible to geocode addresses or objects using the geocodePL_get()
function.
Build and control interactive 2D and 3D maps with R/Shiny'. Lean set of powerful commands wrapping native calls to AMap <https://lbs.amap.com/api/jsapi-v2/summary/>. Deliver rich mapping functionality with minimal overhead.
This package provides utilities for working with various Confluence API <https://docs.atlassian.com/ConfluenceServer/rest/latest/>
, including a functionality to convert an R Markdown document to Confluence format and upload it to Confluence automatically.
Process Digital Cover Photography images of tree canopies to get canopy attributes like Foliage Cover and Leaf Area Index. Detailed description of the methods in Chianucci et al. (2022) <doi:10.1007/s00468-018-1666-3>.
This package provides a significant pattern mining-based toolbox for region-based genome-wide association studies and higher-order epistasis analyses, implementing the methods described in Llinares-López et al. (2017) <doi:10.1093/bioinformatics/btx071>.
Convex Clustering methods, including K-means algorithm, On-line Update algorithm (Hard Competitive Learning) and Neural Gas algorithm (Soft Competitive Learning), and calculation of several indexes for finding the number of clusters in a data set.
Datasets and functions to accompany the book Analisis de datos con el programa estadistico R: una introduccion aplicada by Salas-Eljatib (2021, ISBN: 9789566086109). The package helps carry out data management, exploratory analyses, and model fitting.
Visualize one-factor data frame. Beads plot consists of diamonds of each factor of each data series. A diamond indicates average and range. Look over a data frame with many numeric columns and a factor column.
Decodes meshes and point cloud data encoded by the Draco mesh compression library from Google. Note that this is only designed for basic decoding and not intended as a full scale wrapping of the Draco library.