This package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

This package provides functions to estimate variance-mean dependence in count data from high-throughput nucleotide sequencing assays and test for differential expression based on a model using the negative binomial distribution.

This package extends the ggplot2 plotting system which implements a grammar of graphics. ggtree is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.

This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.

This package conducts batch effects removal from a taxa read count table by a conditional quantile regression method. The distributional attributes of microbiome data - zero-inflation and over-dispersion, are simultaneously considered.

This package provides an infrastructure for representing, manipulating and analyzing transaction data and patterns (frequent itemsets and association rules). It also provides C implementations of the association mining algorithms Apriori and Eclat.

This package provides key-value stores with automatic pruning. Caches can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.

RESTinio is a header-only C++14 library that gives you an embedded HTTP/Websocket server. It is based on standalone version of ASIO and targeted primarily for asynchronous processing of HTTP-requests.

Spy is a mocking library. By default, it will raise an error if you attempt to stub a method that doesn't exist or call the stubbed method with the wrong arity.

ruby-unf is a wrapper library to bring Unicode Normalization Form support to both Ruby and JRuby. It uses unf_ext on CRuby and java.text.Normalizer on JRuby.

This package allows to detect and correct for spatial and intensity biases with two-channel microarray data. The normalization method implemented in this package is based on robust neural networks fitting.

This package provides tools and functions to efficiently create datasets used in pharmacometric analysis. Additional functionality is added to create documentation and prepare files for submission and quality control purposes.

This includes functions for creating 3D and 4D images using WebGL', rgl', and JavaScript commands. This package relies on the X toolkit ('XTK', <https://github.com/xtk/X#readme>).

This package provides a collection of functions that allow servers (specifically BPKP) to summarize and verify shift earnings, identify composition of tips and hourly wage, and track performance through several metrics.

An umbrella package providing a phenotype/genotype data structure and scalable and efficient computational methods for large genomic datasets in combination with several other packages: BEDMatrix', LinkedMatrix', and symDMatrix'.

Can take in images in either .jpg, .jpeg, or .png format and creates a colour palette of the most frequent colours used in the image. Also provides some custom colour palettes.

Dynamic slicing is a method designed for dependency detection between a categorical variable and a continuous variable. It could be applied for non-parametric hypothesis testing and gene set enrichment analysis.

This package provides a sparse Partial Least Squares implementation which uses soft-threshold estimation of the covariance matrices and therein introduces sparsity. Number of components and regularization coefficients are automatically set.

This package provides tools for post-process, evaluate and visualize results from 3d Meteorological and Air Quality models against point observations (i.e. surface stations) and grid (i.e. satellite) observations.

This package provides a research estimation tool for analysts that work with sample-based inventory data from the U.S. Department of Agriculture, Forest Service, Forest Inventory and Analysis (FIA) Program.

Multi-threaded GIF encoder written in Rust: <https://gif.ski/>. Converts images to GIF animations using pngquant's efficient cross-frame palettes and temporal dithering with thousands of colors per frame.

Simplify your R data analysis and data visualization workflow by turning your data frame into an interactive Tableau'-like interface, leveraging the graphic-walker JavaScript library and the htmlwidgets package.

This package implements time series z-normalization, SAX, HOT-SAX, VSM, SAX-VSM, RePair, and RRA algorithms for time series discord (anomaly) discovery, grammatical compression, and interpretable time series classification.

Estimation algorithms for Kullback-Leibler divergence between two probability distributions, based on one or two samples, and including uncertainty quantification. Distributions can be uni- or multivariate and continuous, discrete or mixed.