This package provides a cross-platform solution to open files, directories or URLs with their associated programs.

Pcb-rnd is a Printed Circuit Board layout editor, part of the RiNgDove EDA suite.

Pg is the Ruby interface to the PostgreSQL RDBMS. It works with PostgreSQL 9.3 and later.

rfaRm provides a client interface to the Rfam database of RNA families. Data that can be retrieved include RNA families, secondary structure images, covariance models, sequences within each family, alignments leading to the identification of a family and secondary structures in the dot-bracket format.

This package provides tools for differential expression analysis at both gene and isoform level using RNA-seq data

This package implements the method csSAM that computes cell-specific differential expression from measured cell proportions using SAM.

This package provides various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.

Restbed is a comprehensive and consistent programming model for building applications that require seamless and secure communication over HTTP.

This package provides a terminal emulator with hyperlink support. It's based on VTE and aimed at power users.

The R package used in the manuscript "Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering".

Game of Trees (Got) is a version control system which prioritizes ease of use and simplicity over flexibility.

This package provides a toolkit for working with Biological Observation Matrix (BIOM) files. Features include reading/writing all BIOM formats, rarefaction, alpha diversity, beta diversity (including UniFrac), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided.

This package provides many functions for computing the nonparametric maximum likelihood estimator (NPMLE) for censored and truncated data.

This package provides a computationally stable approach of fitting a Gaussian Process (GP) model to a deterministic simulator.

Customize Bootstrap and Bootswatch themes, like colors, fonts, grid layout, to use in Shiny applications, rmarkdown documents and flexdashboard.

This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL in linkage maps.

This package provides interfaces to audio devices (mainly sample-based) from R to allow recording and playback of audio.

Rove is a unit testing framework for Common Lisp applications. This is intended to be a successor of Prove.

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

This package provides a package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.

This is a package for noise-robust soft clustering of gene expression time-series data (including a graphical user interface).

This is a companion package for the book "A Course in Statistics with R" (ISBN 978-1-119-15272-9.)

This package provides counterparts to R string manipulation functions that account for the effects of ANSI text formatting control sequences.

Proto is an object oriented system using object-based, also called prototype-based, rather than class-based object oriented ideas.