This package allows users to create CSS grid and flexbox layouts for R/Shiny without needing to write custom CSS.

This package does local optimization using two derivatives and trust regions. Guaranteed to converge to local minimum of objective function.

Ronn-NG is an updated fork of ronn. It builds manuals in HTML and Unix man page format from Markdown.

Remmina is a client to use other desktops remotely. RDP, VNC, SPICE, NX, XDMCP, SSH and EXEC network protocols are supported.

This package provides a set of annotation maps describing the entire MeSH assembled using data from MeSH.

This package applies several machine learning methods, including SVM, bagSVM, Random Forest and CART to RNA-Seq data.

MEDME allows the prediction of absolute and relative methylation levels based on measures obtained by MeDIP-microarray experiments.

MuSiC is a deconvolution method that utilizes cross-subject scRNA-seq to estimate cell type proportions in bulk RNA-seq data.

This package provides extended data frames, with a special data frame column which contains two indexes, with potentially a nesting structure.

The objective of this package is to perform inference using an expressive statistical grammar that coheres with the Tidy design framework.

This package lets you import foreign statistical formats into R via the ReadStat C library.

This package provides an R interface to the libgit2 library, which is a pure C implementation of the Git core methods.

ReadOSM is a library to extract valid data from within an OpenStreetMap input file (in .osm or .osm.pbf format).

RE is a small, portable, lightweight, and quick, regular expression library for Common Lisp. It is a non-recursive, backtracing VM.

RgnTX allows the integration of transcriptome annotations so as to model the complex alternative splicing patterns. It supports the testing of transcriptome elements without clear isoform association, which is often the real scenario due to technical limitations. It involves functions that do permutaion test for evaluating association between features and transcriptome regions.

The purpose of this GO.db annotation package is to provide detailed information about the latest version of the Gene Ontologies.

This package provides helper functions with a consistent interface to coerce and verify the types and shapes of values for input checking.

This package provides a derivative-free optimization by quadratic approximation based on an interface to Fortran implementations by M. J. D. Powell.

The rocPRIM is a header-only library providing HIP parallel primitives for developing performant GPU-accelerated code on the AMD ROCm platform.

This is a package for inference of protein activity from gene expression data. It includes the VIPER and msVIPER algorithms

ROSeq - A rank based approach to modeling gene expression with filtered and normalized read count matrix. ROSeq takes filtered and normalized read matrix and cell-annotation/condition as input and determines the differentially expressed genes between the contrasting groups of single cells. One of the input parameters is the number of cores to be used.

This package wraps the functionality of the Thermo Fisher Scientic RawFileReader .NET 8.0 assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.

This package provides tools to detect Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.

This package provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.