This package contains a collection of useful functions for basic data computation and manipulation, wrapper functions for generating ggplot2 graphics, including statistical model diagnostic plots, methods for computing statistical models quality measures (such as AIC, BIC, r squared, root mean squared error) and general utilities.
Distributions that are typically used for exposure rating in general insurance, in particular to price reinsurance contracts. The vignette shows code snippets to fit the distribution to empirical data. See, e.g., Bernegger (1997) <doi:10.2143/AST.27.1.563208> freely available on-line.
This package performs nonparametric estimation in mixture cure models, and significance tests for the cure probability. For details, see López-Cheda et al. (2017a) <doi:10.1016/j.csda.2016.08.002> and López-Cheda et al. (2017b) <doi:10.1007/s11749-016-0515-1>.
This package provides functions to use the NamePrism API <https://www.name-prism.com/api> or NamSor API v2 <https://namsor.app/> for classifying names based on gender, 6 U.S. ethnicities, or 39 leaf nationalities. Updated to work with current API endpoints.
An implementation of prediction intervals for random-effects meta-analysis: Higgins et al. (2009) <doi:10.1111/j.1467-985X.2008.00552.x>, Partlett and Riley (2017) <doi:10.1002/sim.7140>, and Nagashima et al. (2019) <doi:10.1177/0962280218773520>, <arXiv:1804.01054>.
The approach is based on the closed testing procedure to control familywise error rate in a strong sense. The local tests implemented are Wald-type and rank-score. The method is described in De Santis, et al., (2026), <doi:10.48550/arXiv.2511.07999>.
Method to estimate the spatial influence scales of landscape variables on a response variable. The method is based on Chandler and Hepinstall-Cymerman (2016) Estimating the spatial scales of landscape effects on abundance, Landscape ecology, 31: 1383-1394, <doi:10.1007/s10980-016-0380-z>.
This package provides programmatic access to official environmental statistics and data of Peru from the National Environmental Information System ('SINIA', <https://sinia.minam.gob.pe/>), Ministry of the Environment ('MINAM'). Includes indicator catalogs, technical metadata sheets ('fichas técnicas'), and structured historical series for R'.
Simulation of event histories with possibly non-linear baseline hazard rate functions, non-linear (time-varying) covariate effect functions, and dependencies on the past of the history. Random generation of event histories is performed using inversion sampling on the cumulative all-cause hazard rate functions.
This package implements a grammar of summary data for clinical reports. Clinical summary tables are decomposed into modular layers, each representing an independent summary block. Supports count, descriptive statistics, and shift layer types with a declarative spec-based API built on data.table for performance.
Imports non-tabular from Excel files into R. Exposes cell content, position and formatting in a tidy structure for further manipulation. Tokenizes Excel formulas. Supports .xlsx and .xlsm via the embedded RapidXML C++ library <https://rapidxml.sourceforge.net>. Does not support .xlsb or .xls'.
Wrapper for using tapkee command line utility, it allows to run it from inside R and catch the results for further analysis and plotting. Tapkee is a program for fast dimension reduction, see package?tapkee and <http://tapkee.lisitsyn.me/> for installation and other details.
This package provides functions to query the UniTCM API (<https://unitcm.qfxulab.com>), covering herb exploration, compound/ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) data, disease-formula associations, Traditional Chinese Medicine (TCM) ontology, transcriptomics, and gene-disease analysis (MIDAS, Mining Integrated Disease Association Sources).
Most universities use specific color combinations to express their unique brand identity. The unicol package provides the colors and color palettes of various universities for easy plotting and printing in R. We collect and provide a diverse range of color palettes for creating scientific visualizations.
This package provides functions to make zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from data.frame, matrix, lm, aov, anova, glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.
The vctrs package provides a concept of vector prototype that can be especially useful when deploying models and code. Serialize these object prototypes to JSON so they can be used to check and coerce data in production systems, and deserialize JSON back to the correct object prototypes.
This package provides a minor collection of HTTP wrappers for the Zamzar file conversion API. The wrappers makes it easy to utilize the API and thus convert between more than 100 different file formats (ranging from audio files, images, movie formats, etc., etc.) through an R session.
This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.
Channel interference in mass cytometry can cause spillover and may result in miscounting of protein markers. We develop a nonparametric finite mixture model and use the mixture components to estimate the probability of spillover. We implement our method using expectation-maximization to fit the mixture model.
Package that simulates adaptive (multi-arm, multi-stage) clinical trials using adaptive stopping, adaptive arm dropping, and/or adaptive randomisation. Developed as part of the INCEPT (Intensive Care Platform Trial) project (<https://incept.dk/>), primarily supported by a grant from Sygeforsikringen "danmark" (<https://www.sygeforsikring.dk/>).
Solving high-dimensional double sparse linear regression via an iterative hard thresholding algorithm. Furthermore, the method is extended to jointly estimate multiple graphical models. For more details, please see <https://www.jmlr.org/papers/v25/23-0653.html> and <doi:10.48550/arXiv.2503.18722>.
Generates nonparametric bootstrap confidence intervals (Efron and Tibshirani, 1993: <doi:10.1201/9780429246593>) for standardized regression coefficients (beta) and other effect sizes, including multiple correlation, semipartial correlations, improvement in R-squared, squared partial correlations, and differences in standardized regression coefficients, for models fitted by lm().
An unofficial, tidy, rate-limited interface to the Bank of Japan Time-Series Data Search API. Search series metadata, retrieve observations by series code or hierarchy, follow pagination automatically, and work with normalized long or wide data frames. The API does not require an API key.
CGAL is a C++ library that aims to provide easy access to efficient and reliable algorithms in computational geometry. Since its version 4, CGAL can be used as standalone header-only library and is available under a double GPL-3|LGPL license. <https://www.cgal.org/>.